![]() |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Glyma.04G078600.4.p | ||||||||
Common Name | GLYMA_04G078600, LOC100805060 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
|
||||||||
Family | NAC | ||||||||
Protein Properties | Length: 357aa MW: 39683.8 Da PI: 8.9542 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 176.5 | 7.3e-55 | 28 | 155 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdk 90 lppGfrFhPtdeelv++yL +k+++++++ ++i++vd++k+ePw+Lp k+k +ekewyfFs rd+ky+tg r+nrat++gyWk+tgkdk Glyma.04G078600.4.p 28 LPPGFRFHPTDEELVTCYLVNKISDSNFTG-RAITDVDLNKCEPWELPGKAKMGEKEWYFFSLRDRKYPTGVRTNRATNTGYWKTTGKDK 116 79*************************999.89***************99999************************************* PP NAM 91 evlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128 e++++ ++el+g+kktLvfykgrap+gek++Wvmheyr+ Glyma.04G078600.4.p 117 EIFNSeTSELIGMKKTLVFYKGRAPRGEKSNWVMHEYRI 155 ***9867888***************************97 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.22E-63 | 23 | 176 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 60.467 | 28 | 176 | IPR003441 | NAC domain |
Pfam | PF02365 | 3.8E-28 | 29 | 155 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 357 aa Download sequence Send to blast |
MQKEKEAIIK EGTTEIEMEG TRAKEGTLPP GFRFHPTDEE LVTCYLVNKI SDSNFTGRAI 60 TDVDLNKCEP WELPGKAKMG EKEWYFFSLR DRKYPTGVRT NRATNTGYWK TTGKDKEIFN 120 SETSELIGMK KTLVFYKGRA PRGEKSNWVM HEYRIHSKSS YRTNRDEWVV CRVFKKSGGA 180 KKYHSSNHAR TVNPYSLEIG PSIMPPPMMQ LGDPSAHFLY GRNYMNSAEL AELARVLRGG 240 GSTSSVNLPI QSQLSYPTSS SAGGGGFIIS GLNLNLGGGA TATTQPILRP MQPSPPVHTM 300 AQVLDVNSSM MTTSSLGAEN NVGYGTEVSN NMNSHGNRYM GMDHHCMDLD NYWPSY* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 1e-56 | 27 | 182 | 16 | 171 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 1e-56 | 27 | 182 | 16 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 1e-56 | 27 | 182 | 16 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 1e-56 | 27 | 182 | 16 | 171 | NO APICAL MERISTEM PROTEIN |
3swm_A | 2e-56 | 27 | 182 | 19 | 174 | NAC domain-containing protein 19 |
3swm_B | 2e-56 | 27 | 182 | 19 | 174 | NAC domain-containing protein 19 |
3swm_C | 2e-56 | 27 | 182 | 19 | 174 | NAC domain-containing protein 19 |
3swm_D | 2e-56 | 27 | 182 | 19 | 174 | NAC domain-containing protein 19 |
3swp_A | 2e-56 | 27 | 182 | 19 | 174 | NAC domain-containing protein 19 |
3swp_B | 2e-56 | 27 | 182 | 19 | 174 | NAC domain-containing protein 19 |
3swp_C | 2e-56 | 27 | 182 | 19 | 174 | NAC domain-containing protein 19 |
3swp_D | 2e-56 | 27 | 182 | 19 | 174 | NAC domain-containing protein 19 |
4dul_A | 1e-56 | 27 | 182 | 16 | 171 | NAC domain-containing protein 19 |
4dul_B | 1e-56 | 27 | 182 | 16 | 171 | NAC domain-containing protein 19 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
---|---|---|---|
Motif ID | Method | Source | Motif file |
MP00277 | DAP | Transfer from AT2G24430 | Download |
![]() |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Glyma.04G078600.4.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AP015035 | 1e-108 | AP015035.1 Vigna angularis var. angularis DNA, chromosome 2, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_003523724.3 | 0.0 | protein CUP-SHAPED COTYLEDON 2 isoform X2 | ||||
Refseq | XP_028228168.1 | 0.0 | protein CUP-SHAPED COTYLEDON 2-like isoform X2 | ||||
TrEMBL | K7KIT4 | 0.0 | K7KIT4_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA04G08320.2 | 0.0 | (Glycine max) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G24430.2 | 1e-104 | NAC domain containing protein 38 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Glyma.04G078600.4.p |
Entrez Gene | 100805060 |