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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.04G064100.1.p | ||||||||
Common Name | GLYMA_04G064100, LOC100790048 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | TALE | ||||||||
Protein Properties | Length: 412aa MW: 45982 Da PI: 6.1003 | ||||||||
Description | TALE family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 23.5 | 9.5e-08 | 359 | 392 | 21 | 54 |
HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 21 knrypsaeereeLAkklgLterqVkvWFqNrRak 54 k +yp++e++++L +++gL+ +q+ +WF N+R + Glyma.04G064100.1.p 359 KWPYPTEEDKARLVQETGLQLKQINNWFINQRKR 392 469*****************************87 PP | |||||||
2 | ELK | 28.9 | 2.7e-10 | 313 | 334 | 1 | 22 |
ELK 1 ELKhqLlrKYsgyLgsLkqEFs 22 ELKh+L+++Y+++++++++E++ Glyma.04G064100.1.p 313 ELKHELKQGYKEKIVDIREEIL 334 9*******************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM01255 | 2.6E-20 | 148 | 192 | IPR005540 | KNOX1 |
Pfam | PF03790 | 8.0E-18 | 150 | 191 | IPR005540 | KNOX1 |
SMART | SM01256 | 3.5E-27 | 201 | 256 | IPR005541 | KNOX2 |
Pfam | PF03791 | 2.4E-20 | 205 | 255 | IPR005541 | KNOX2 |
PROSITE profile | PS51213 | 9.969 | 313 | 333 | IPR005539 | ELK domain |
Pfam | PF03789 | 9.5E-7 | 313 | 334 | IPR005539 | ELK domain |
SMART | SM01188 | 6.1E-4 | 313 | 334 | IPR005539 | ELK domain |
PROSITE profile | PS50071 | 11.726 | 333 | 396 | IPR001356 | Homeobox domain |
SMART | SM00389 | 4.7E-11 | 335 | 400 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 4.23E-16 | 335 | 399 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 4.29E-12 | 336 | 397 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 4.2E-25 | 340 | 397 | IPR009057 | Homeodomain-like |
Pfam | PF05920 | 1.1E-17 | 353 | 392 | IPR008422 | Homeobox KN domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009416 | Biological Process | response to light stimulus | ||||
GO:0009722 | Biological Process | detection of cytokinin stimulus | ||||
GO:0071345 | Biological Process | cellular response to cytokine stimulus | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005829 | Cellular Component | cytosol | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 412 aa Download sequence Send to blast |
MAYHHNPQEL PLHHFTDQQQ HHNQPLVDNS LLSDPASKPA SDPHQPAPNW LNNALLRTHY 60 TDNNNNNNVN AANNNTNNGT NFLNLHTSTS DSGQWLARPI LNRNHSEVID DVTGAGDSNM 120 AAAESGDLKG DAAAVEGGSD GLMNWQNARL KAEILAHPLY EQLLSAHVAC LRIATPVDQL 180 PRIDAQLTQS QNVVAKYSAF GQAIVGDDKE LDQFLSHYVL LLCSFKEQLQ QHVRVHAMEA 240 VMACWEIEQS LQSLTGVSPG EGTGATMSDE EDEQVDSDAN LFDGALDGPD SMGFGPLIPT 300 ENERSLMERV RHELKHELKQ GYKEKIVDIR EEILRKRRAG KLPGDTTSVL KAWWQSHSKW 360 PYPTEEDKAR LVQETGLQLK QINNWFINQR KRNWHSNPST STALKSKRKR S* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 389 | 409 | RKRNWHSNPSTSTALKSKRKR |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Gma.20148 | 0.0 | cotyledon| leaf |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Maximally expressed in sepals, petals and fully expanded leaves. Also expressed in other flower organs and in developing leaves. Low level expression in stem internodes. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.04G064100.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003522507.1 | 0.0 | homeobox protein knotted-1-like 3 isoform X2 | ||||
Swissprot | O04136 | 0.0 | KNAP3_MALDO; Homeobox protein knotted-1-like 3 | ||||
TrEMBL | I1JU99 | 0.0 | I1JU99_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA04G06810.1 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1017 | 34 | 108 |
Representative plant | OGRP167 | 17 | 148 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G25220.2 | 0.0 | KNOTTED1-like homeobox gene 3 |
Link Out ? help Back to Top | |
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Phytozome | Glyma.04G064100.1.p |
Entrez Gene | 100790048 |