PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.04G062600.1.p
Common NameGLYMA_04G062600, LOC100819663
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family C2H2
Protein Properties Length: 282aa    MW: 30844.4 Da    PI: 8.0843
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.04G062600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.40.0002396118123
                          EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                          ++C++C + F ++  L  H++ H
  Glyma.04G062600.1.p  96 FSCNYCQRKFYSSQALGGHQNAH 118
                          89*****************9988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.19E-693123No hitNo description
PROSITE profilePS5015711.42796123IPR007087Zinc finger, C2H2
PROSITE patternPS00028098118IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 282 aa     Download sequence    Send to blast
METLSHEPLL YDNSAGETPP SPSTPLQNSR EKKQLSVKEE EEEEKEAKAD TLLDLNAPGG  60
DSAIGCSPVL NLITCLDTDL SSTTSENQHG SEPRVFSCNY CQRKFYSSQA LGGHQNAHKR  120
ERSIAKRGHQ RSGSRLMASA TTALGIPFLH NHLHHHYATM ASLPLHGASS NNKPLGIQAH  180
SIIHKPSSSN YSHFSFNGFG TTFGHRGWSR PLIDQQPGIG KLTMESFHKT SRGNVGKFDV  240
VKTTRLNSAT NEEISGYMVS GISLLKTNQE EMKHLDLSLK L*
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.04G062600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003523675.10.0zinc finger protein 1
RefseqXP_028227944.10.0zinc finger protein 1-like
TrEMBLA0A445KWE80.0A0A445KWE8_GLYSO; Zinc finger protein 3
TrEMBLI1JU870.0I1JU87_SOYBN; Uncharacterized protein
STRINGGLYMA04G06660.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF14393172
Representative plantOGRP8215137
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25160.11e-41zinc finger protein 3