PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Glyma.04G054800.1.p

Common Name

GLYMA_04G054800

Organism

Glycine max

Taxonomic ID

3847

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

Nin-like

Protein Properties

Length: 392aa MW: 44611 Da PI: 5.4633

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Glyma.04G054800.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	42.5	1.3e-13	289	336	3	50
RWP-RK 3 keisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkik 50 ++++l+dls F+ ++k+A + L++++T++K iCR+ + WPhR+++ Glyma.04G054800.1.p 289 NSMTLDDLSGVFHITMKAAKNVLDMSVTAIKSICRKCRLYKWPHRQLQ 336 689*******************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	13.424	270	358	IPR003035	RWP-RK domain
Pfam	PF02042	2.1E-13	290	336	IPR003035	RWP-RK domain

Sequence ? help Back to Top
Protein Sequence Length: 392 aa Download sequence Send to blast
MDNNNNNNIN SSVFVSYACR DPFVSPLLDN FNEPDPALVY LLPEPNLRND EQQPLQGHVS 60 STDSTIHDQS HHYCNDNFTI GGGVFPNYEF VEGSSKNKRK YPFTDTDIED QSFMHDFEAG 120 PSNLNQPASG NMGPRNWPPM PRPFFCTCCQ VLRQTIHTNG TDFERLEIHG RIGLISHIII 180 QNQSITPGGR SCDNYQMIDF TNGSPAEVKG FLEDYIARKD KLGYIIAEES FSEFYEAVCT 240 KLDWVGKRTN NEDDDLTPQN VEEEPEPEPE PPKERRRKRS RKDQSDRINS MTLDDLSGVF 300 HITMKAAKNV LDMSVTAIKS ICRKCRLYKW PHRQLQPLAR RLKVLKRALE SSQDPVVIQT 360 TSMEVRRIKQ HMTQLCGGVT PTGIEIPEVE E*

Sequence ? help Back to Top

Protein Sequence Length: 392 aa Download sequence Send to blast

MDNNNNNNIN SSVFVSYACR DPFVSPLLDN FNEPDPALVY LLPEPNLRND EQQPLQGHVS  60
STDSTIHDQS HHYCNDNFTI GGGVFPNYEF VEGSSKNKRK YPFTDTDIED QSFMHDFEAG  120
PSNLNQPASG NMGPRNWPPM PRPFFCTCCQ VLRQTIHTNG TDFERLEIHG RIGLISHIII  180
QNQSITPGGR SCDNYQMIDF TNGSPAEVKG FLEDYIARKD KLGYIIAEES FSEFYEAVCT  240
KLDWVGKRTN NEDDDLTPQN VEEEPEPEPE PPKERRRKRS RKDQSDRINS MTLDDLSGVF  300
HITMKAAKNV LDMSVTAIKS ICRKCRLYKW PHRQLQPLAR RLKVLKRALE SSQDPVVIQT  360
TSMEVRRIKQ HMTQLCGGVT PTGIEIPEVE E*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	275	282	RRKRSRKD

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Glyma.04G054800.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_028227146.1	0.0	uncharacterized protein LOC114408319
TrEMBL	K7KI92	0.0	K7KI92_SOYBN; Uncharacterized protein
STRING	GLYMA04G05755.1	0.0	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF7478	28	46
Representative plant	OGRP10333	4	8

Link Out ? help Back to Top
Phytozome	Glyma.04G054800.1.p