PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.04G050800.4.p
Common NameGLYMA_04G050800, LOC100820354
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family TALE
Protein Properties Length: 576aa    MW: 63623.2 Da    PI: 6.1979
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.04G050800.4.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox25.62.1e-084925301854
                          HHHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
             Homeobox  18 lFek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                          +F++  ++yp+ +e+  LA k gLt +qV++WF N R +
  Glyma.04G050800.4.p 492 MFQNflHPYPKDAEKHLLAVKSGLTRSQVSNWFINARVR 530
                          5776679******************************88 PP
2BELL70.43.3e-23364433171
                 BELL   1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeq 71 
                          +r++ ++kka+Ll ll+  d+rY+q+ ++++tv+s+F+a+++l++ ++++++Al++iS  ++ L+++i++ 
  Glyma.04G050800.4.p 364 QRHAAESKKAQLLALLQLADNRYSQCLDEIHTVVSAFHAATELDP-QIHAHFALQTISILYKDLRERISNY 433
                          68999****************************************.**********************975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005741.4E-21288432IPR006563POX domain
PfamPF075264.2E-24294431IPR006563POX domain
SMARTSM003898.0E-6474538IPR001356Homeobox domain
CDDcd000868.73E-11474535No hitNo description
SuperFamilySSF466894.71E-15476543IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.606.0E-25477540IPR009057Homeodomain-like
PfamPF059209.2E-15491530IPR008422Homeobox KN domain
PROSITE profilePS5007110.851493534IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 576 aa     Download sequence    Send to blast
MLMESDMYTA ALGISGRDAR VIDEISQHST SNPLVQCYSL DLNNQSHIIN GISMLSGEQG  60
EPINNVHGDA CFINPSIIAD SSPLVTSQGK TIVGDASSPM ENTEFQEHLV GGMSITPSSL  120
VAILAARIGF EENLENSSSA LPPSLCSIGA LGAFFNNLQG TSNSNPLSAT FEDCGYNEVP  180
GNWNANKFPK APEIHGTGCQ PYSSLANLDP NEWTSSNLAN MANHANHSSS FSKELSLSLA  240
TSTTTGQCSE VSCSNVTPCM NGTMSGLEQA FCGSSRELSM NLGGDKYVQF SPKVLESRYL  300
IGIREILAQI ARYSFENLEQ LNYSASGNRS GGNKSSSAFP PKRRILIDNN ANSTYEAHAE  360
PPLQRHAAES KKAQLLALLQ LADNRYSQCL DEIHTVVSAF HAATELDPQI HAHFALQTIS  420
ILYKDLRERI SNYILAMGSN FNNSCSEENE WSAETSFLQK QWALQQLNRK DQLWRPQRGL  480
PERSVWVLRA WMFQNFLHPY PKDAEKHLLA VKSGLTRSQV SNWFINARVR LWKPMIEEMY  540
AEMNKRKACR NEEGMQSNHG NRISMSNQRF NQCQL*
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Down-regulated in the shoot apical meristem (SAM) upon floral induction. {ECO:0000269|PubMed:17908157}.
UniprotTISSUE SPECIFICITY: Most abundant in flowers.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor which may be involved in the signal transduction pathway downstream of the COP1 gene. Controls floral competency as a specific activator of FLC expression. Is responsive of the nuclear import of SHOOT MERISTEMLESS (STM). {ECO:0000269|PubMed:17908157}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.04G050800.4.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By light. In etiolated seedlings, maximally expressed after 3 days of illumination.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0945590.0BT094559.1 Soybean clone JCVI-FLGm-18H4 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006577866.10.0uncharacterized protein LOC100820354 isoform X1
RefseqXP_006577867.10.0uncharacterized protein LOC100820354 isoform X1
RefseqXP_028227790.10.0homeobox protein ATH1-like
SwissprotP487311e-101ATH1_ARATH; Homeobox protein ATH1
TrEMBLA0A445KVU70.0A0A445KVU7_GLYSO; Homeobox protein ATH1 isoform A
TrEMBLK7KI690.0K7KI69_SOYBN; Uncharacterized protein
STRINGGLYMA04G05361.10.0(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32980.15e-88homeobox gene 1
Publications ? help Back to Top
  1. Khan M, et al.
    Repression of Lateral Organ Boundary Genes by PENNYWISE and POUND-FOOLISH Is Essential for Meristem Maintenance and Flowering in Arabidopsis.
    Plant Physiol., 2015. 169(3): p. 2166-86
    [PMID:26417006]