![]() |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Glyma.04G050300.1.p | ||||||||
Common Name | GLYMA_04G050300, LOC100811289 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
|
||||||||
Family | C3H | ||||||||
Protein Properties | Length: 234aa MW: 26146.2 Da PI: 8.5475 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 29.3 | 1.5e-09 | 82 | 101 | 6 | 26 |
-SGGGGTS--TTTTT-SS-SS CS zf-CCCH 6 CrffartGtCkyGdrCkFaHg 26 C+++++ G Ck+Gd+C+FaHg Glyma.04G050300.1.p 82 CPDYRK-GNCKRGDTCQFAHG 101 ******.*************9 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50103 | 6.23 | 23 | 65 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 3.61E-5 | 75 | 105 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 1.7E-5 | 76 | 102 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.742 | 77 | 103 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 5.8E-7 | 81 | 103 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 2.5E-7 | 82 | 101 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 4.4E-4 | 108 | 139 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 6.446 | 111 | 135 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 14 | 111 | 134 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 234 aa Download sequence Send to blast |
MIPNVQIPTW DADGGGALSP SISSNADTCS LFSSDHFRMF QFKVRNCPRG RSHDWTECPY 60 AHPAEKARRR DPRKYHYSGT SCPDYRKGNC KRGDTCQFAH GVFECWLHPS RYRTQLCKDG 120 TNCRRRVCFF AHTSDQLRVV TDSSSSSFVS SPTSVLINSS FSDSSPYSFV RGIVKLDEEG 180 SYSGLTRCVF GSPRGGFMSV NGCEEEPAME RVESGRDIRA RIYAKLSREN SIG* |
Expression -- UniGene ? help Back to Top | ||||||
---|---|---|---|---|---|---|
UniGene ID | E-value | Expressed in | ||||
Gma.54696 | 0.0 | cotyledon| hypocotyl| root| seed coat| somatic embryo |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Glyma.04G050300.1.p |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | BT095736 | 0.0 | BT095736.1 Soybean clone JCVI-FLGm-19F20 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_003522232.1 | 1e-173 | zinc finger CCCH domain-containing protein 23 | ||||
Swissprot | O82307 | 3e-76 | C3H23_ARATH; Zinc finger CCCH domain-containing protein 23 | ||||
TrEMBL | I1JTV7 | 1e-172 | I1JTV7_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA04G05290.1 | 1e-173 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2056 | 31 | 76 |
Representative plant | OGRP1170 | 16 | 44 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G25900.2 | 2e-65 | C3H family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | Glyma.04G050300.1.p |
Entrez Gene | 100811289 |
Publications ? help Back to Top | |||
---|---|---|---|
|