PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.04G049500.1.p
Common NameGLYMA_04G049500, LOC100798133
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family TALE
Protein Properties Length: 362aa    MW: 42059.3 Da    PI: 7.0553
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.04G049500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox28.62.4e-092893232155
                          HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS
             Homeobox  21 knrypsaeereeLAkklgLterqVkvWFqNrRake 55 
                          k +yps++e+  LA+ +gL+++q+ +WF N+R ++
  Glyma.04G049500.1.p 289 KWPYPSESEKVALAEATGLDQKQINNWFINQRKRH 323
                          669*****************************885 PP
2ELK31.63.7e-11243264122
                  ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                          ELK +Ll+KYsgyLg+Lk+E+s
  Glyma.04G049500.1.p 243 ELKSHLLKKYSGYLGTLKKELS 264
                          9*******************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012552.0E-1799143IPR005540KNOX1
PfamPF037905.2E-20100141IPR005540KNOX1
SMARTSM012561.7E-25150201IPR005541KNOX2
PfamPF037911.2E-23154200IPR005541KNOX2
PROSITE profilePS5121310.685243263IPR005539ELK domain
SMARTSM011883.8E-6243264IPR005539ELK domain
PfamPF037893.0E-8243264IPR005539ELK domain
PROSITE profilePS5007112.892263326IPR001356Homeobox domain
SuperFamilySSF466891.41E-19264337IPR009057Homeodomain-like
SMARTSM003894.1E-13265330IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.602.4E-27268329IPR009057Homeodomain-like
CDDcd000864.68E-11275327No hitNo description
PfamPF059201.1E-16283322IPR008422Homeobox KN domain
PROSITE patternPS000270301324IPR017970Homeobox, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 362 aa     Download sequence    Send to blast
MEEYTNNHLS QNTSPRANLL YSLAGGSSVG NRHHQLIPFN TFHLQTGRSD HCFQPDQAPH  60
PSVKTESNNS HLHYPLMRSN LHHMLHPQQG GSQSSNELEA IKAKIIDHPH YSNLLQVYMD  120
CQKVGAPPEV AARFATVKEN FEARQRSLVR SMETCKDPEL DQFMEAYYDM LVKYREELTR  180
PIEEAKDFMQ RIESQLNTLC NGTVRIFSDD KWENIGSSSE EDKDNSGRET ELIEIDPQAE  240
DRELKSHLLK KYSGYLGTLK KELSKKKKKG KLPKDARQKL LSWWELHYKW PYPSESEKVA  300
LAEATGLDQK QINNWFINQR KRHWKPSEDM QFMVMDGLHA QNATLYMDGH YMANDHYRLW  360
P*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.5690.0hypocotyl| meristem
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed only in the stems.
Functional Description ? help Back to Top
Source Description
UniProtProbably binds to the DNA sequence 5'-TGAC-3'.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.04G049500.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0964440.0BT096444.1 Soybean clone JCVI-FLGm-15F15 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003522218.10.0homeobox protein knotted-1-like 2
SwissprotO041351e-151KNAP2_MALDO; Homeobox protein knotted-1-like 2
TrEMBLI1JTU50.0I1JTU5_SOYBN; Uncharacterized protein
STRINGGLYMA04G05210.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF45843246
Representative plantOGRP16717148
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G08150.11e-135KNOTTED-like from Arabidopsis thaliana