PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.04G048000.2.p
Common NameGLYMA_04G048000
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family bHLH
Protein Properties Length: 348aa    MW: 37822.1 Da    PI: 5.6291
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.04G048000.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH34.44.1e-11240288355
                          HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                           +h+ +Er RR++i +++  L+el+P +    +kK  Ka +L + ++Y++sLq
  Glyma.04G048000.2.p 240 NSHSLAERVRREKISERMRLLQELVPGC----DKKTGKAVMLDEIINYVQSLQ 288
                          58*************************9....9*******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000833.46E-12235292No hitNo description
SuperFamilySSF474591.31E-18235306IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088816.425237287IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.9E-18238306IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.6E-8240288IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.4E-12243293IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 348 aa     Download sequence    Send to blast
MGGRENALGL QSVSETTVIS SVSMAMPSGV VANPFLASSA WDPLVPLSQT LGGSLMVSHS  60
EFANSAYPSV LENQGMNCDS HFVQYVSDSN FEHMALKVPS FGQTGSYDIA NTGYLPNHNP  120
SNESGMERSP INNEQSKLEG STSEEGAAPD EHKRKRGLDY NFTFSSNKNA EGEALKDSSG  180
KSCDDDVKEQ CEKKPRVAQN STANLCGKQL LKQKKDDSES EEGSKENFIH VRARRGQATN  240
SHSLAERVRR EKISERMRLL QELVPGCDKK TGKAVMLDEI INYVQSLQQQ VEFLSMKLAT  300
VNPQLNFNVE QICSKDSHIG HGPIGGYGAS ISMPNPSTQF PPMPQDG*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.328493e-77epicotyl| flower| hypocotyl| root
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.04G048000.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028227759.10.0transcription factor bHLH74-like isoform X4
TrEMBLA0A445KW740.0A0A445KW74_GLYSO; Transcription factor bHLH74 isoform C
TrEMBLK7KI470.0K7KI47_SOYBN; Uncharacterized protein
STRINGGLYMA04G05091.10.0(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10120.16e-56bHLH family protein