PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.04G048000.1.p
Common NameGLYMA_04G048000, LOC100787749
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family bHLH
Protein Properties Length: 377aa    MW: 41098.7 Da    PI: 5.4405
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.04G048000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH34.24.6e-11240288355
                          HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                           +h+ +Er RR++i +++  L+el+P +    +kK  Ka +L + ++Y++sLq
  Glyma.04G048000.1.p 240 NSHSLAERVRREKISERMRLLQELVPGC----DKKTGKAVMLDEIINYVQSLQ 288
                          58*************************9....9*******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.44E-18235306IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.29E-12235292No hitNo description
PROSITE profilePS5088816.425237287IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.3E-18238306IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.1E-8240288IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.4E-12243293IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 377 aa     Download sequence    Send to blast
MGGRENALGL QSVSETTVIS SVSMAMPSGV VANPFLASSA WDPLVPLSQT LGGSLMVSHS  60
EFANSAYPSV LENQGMNCDS HFVQYVSDSN FEHMALKVPS FGQTGSYDIA NTGYLPNHNP  120
SNESGMERSP INNEQSKLEG STSEEGAAPD EHKRKRGLDY NFTFSSNKNA EGEALKDSSG  180
KSCDDDVKEQ CEKKPRVAQN STANLCGKQL LKQKKDDSES EEGSKENFIH VRARRGQATN  240
SHSLAERVRR EKISERMRLL QELVPGCDKK TGKAVMLDEI INYVQSLQQQ VEFLSMKLAT  300
VNPQLNFNVE QICSKDSHIG HGPIGGYGAS ISMPNPSTQF PPMPQSVLNQ SFYETSYNTI  360
TALDNLGTSG WLKTEL*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.328493e-77epicotyl| flower| hypocotyl| root
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.04G048000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003523632.10.0transcription factor bHLH74 isoform X2
RefseqXP_028227757.10.0transcription factor bHLH74-like isoform X2
TrEMBLK7KI450.0K7KI45_SOYBN; Uncharacterized protein
STRINGGLYMA04G05091.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF75853345
Representative plantOGRP5816313
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10120.13e-58bHLH family protein