PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.04G043800.1.p
Common NameGLYMA_04G043800
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family M-type_MADS
Protein Properties Length: 326aa    MW: 36688.5 Da    PI: 7.1794
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.04G043800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF83.91e-26954146
                         S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEE CS
               SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgkl 46
                         k+ien++nrqvtfskRrng++KKA+ELSvLCd++va+i+fs++g+ 
  Glyma.04G043800.1.p  9 KKIENTTNRQVTFSKRRNGLIKKAYELSVLCDVDVALIMFSPSGRA 54
                         68*****************************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006628.707161IPR002100Transcription factor, MADS-box
SMARTSM004326.0E-36160IPR002100Transcription factor, MADS-box
SuperFamilySSF554557.19E-30280IPR002100Transcription factor, MADS-box
CDDcd002658.39E-37278No hitNo description
PRINTSPR004044.6E-24323IPR002100Transcription factor, MADS-box
PfamPF003191.0E-251055IPR002100Transcription factor, MADS-box
PRINTSPR004044.6E-242338IPR002100Transcription factor, MADS-box
PRINTSPR004044.6E-243859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 326 aa     Download sequence    Send to blast
MGRVKLPIKK IENTTNRQVT FSKRRNGLIK KAYELSVLCD VDVALIMFSP SGRATFFSGN  60
KSIEEILERY VNLSEGEHGR MHNKEHIQKL LSKLKDEAGQ ICQAPSSMTS DSQIEDLRRE  120
IFTCKSQLEE MEKRLRIFEG DPSEITTLSE AEYREYVLRD TLKQVQLRKC VLEEYNSHAT  180
HSPQVHAAKT VDVNGFISRA SKNPVDWFPQ GDPLHVQTLN FANVYDTALV RDQQSHHCTV  240
VDMLTPTSTL LHSANMDLNG QMNPRSSLDA GISNTLHPQF GQAIHTNSSS WQHLNPLGSR  300
TLSIAETREV QLLNSVFLNL PGQTS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6byy_A1e-16180179MEF2 CHIMERA
6byy_B1e-16180179MEF2 CHIMERA
6byy_C1e-16180179MEF2 CHIMERA
6byy_D1e-16180179MEF2 CHIMERA
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in pollen. {ECO:0000269|PubMed:12949148}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that forms a heterodimer with the MADS-box protein AGL30 and is involved in the regulation of pollen maturation at the late stages of pollen development and pollen tube growth. {ECO:0000269|PubMed:19211705}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.04G043800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025983952.10.0agamous-like MADS-box protein AGL66
SwissprotQ1PFC21e-46AGL66_ARATH; Agamous-like MADS-box protein AGL66
TrEMBLA0A445KVE90.0A0A445KVE9_GLYSO; Agamous-like MADS-box protein AGL66 isoform A
TrEMBLK7KI180.0K7KI18_SOYBN; Uncharacterized protein
STRINGGLYMA04G04641.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF136651922
Representative plantOGRP1617761
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G77980.16e-49AGAMOUS-like 66
Publications ? help Back to Top
  1. Zhang S, et al.
    FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development.
    Plant Physiol., 2018. 177(1): p. 285-299
    [PMID:29523711]