 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
Glyma.04G042300.1.p |
| Common Name | Glyma04g04490.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
|
| Family |
MYB |
| Protein Properties |
Length: 260aa MW: 28587.4 Da PI: 8.8482 |
| Description |
MYB family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Glyma.04G042300.1.p | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | Myb_DNA-binding | 60.3 | 4.2e-19 | 5 | 50 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
+g+W++eEde l ++v+ +G+++W+ I++ ++ gR++k+c++rw +
Glyma.04G042300.1.p 5 KGPWSPEEDEALRRLVQTYGPRNWSVISKSIP-GRSGKSCRLRWCNQ 50
79******************************.***********985 PP
|
| 2 | Myb_DNA-binding | 57.6 | 2.8e-18 | 57 | 101 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
r ++T+eEde +++a++++G++ W+tIar ++ gRt++ +k++w++
Glyma.04G042300.1.p 57 RRPFTAEEDEAILKAHARFGNK-WATIARFLN-GRTDNAIKNHWNST 101
679*******************.*********.***********986 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 260 aa
Download sequence Send
to blast |
MDRIKGPWSP EEDEALRRLV QTYGPRNWSV ISKSIPGRSG KSCRLRWCNQ LSPEVERRPF 60
TAEEDEAILK AHARFGNKWA TIARFLNGRT DNAIKNHWNS TLKRKCSEPL SEPRPLKRSA 120
TVSGSQSGSD LSDSGLPIIL ARSVSVTVAP SNHLAETASS SVTDPATLLS LSLPGFDSCD 180
GANNGPGPNQ GPSCGPFQEI PMLGSQKQLF SQEFMKVMQE MIRVEVRNYM SVLERNGVCM 240
QTDAIRNSVL ERMGIGRVE*
|
| 3D Structure ? help Back to Top |
 |
| PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
| 1gv2_A | 1e-42 | 4 | 106 | 3 | 105 | MYB PROTO-ONCOGENE PROTEIN |
| 1h88_C | 5e-42 | 4 | 106 | 57 | 159 | MYB PROTO-ONCOGENE PROTEIN |
| 1h89_C | 5e-42 | 4 | 106 | 57 | 159 | MYB PROTO-ONCOGENE PROTEIN |
| 1mse_C | 9e-43 | 4 | 106 | 3 | 105 | C-Myb DNA-Binding Domain |
| 1msf_C | 9e-43 | 4 | 106 | 3 | 105 | C-Myb DNA-Binding Domain |
| Search in ModeBase |
| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Transcription factor that functions in salt stress response. Acts as negative regulator of NHX7/SOS1 and CBL4/SOS3 induction in response to salt stress (PubMed:23809151). In response to auxin, activates the transcription of the auxin-responsive gene IAA19. The IAA19 transcription activation by MYB73 is enhanced by direct interaction between MYB73 and PYL8 (PubMed:24894996). {ECO:0000269|PubMed:23809151, ECO:0000269|PubMed:24894996}. |
| Regulation -- Description ? help
Back to Top |
| Source |
Description |
| UniProt | INDUCTION: Induced by salt stress. {ECO:0000269|PubMed:23809151}. |
| Annotation --
Nucleotide ? help
Back to Top |
| Source |
Hit ID |
E-value |
Description |
| GenBank | KT031188 | 0.0 | KT031188.1 Glycine max clone HN_CCL_41 MYB/HD-like transcription factor (Glyma04g04490.1) mRNA, partial cds. |
