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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.04G039600.1.p | ||||||||
Common Name | GLYMA_04G039600, LOC100780813 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | HSF | ||||||||
Protein Properties | Length: 364aa MW: 40646.7 Da PI: 8.2939 | ||||||||
Description | HSF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HSF_DNA-bind | 113.7 | 1.2e-35 | 25 | 117 | 2 | 103 |
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkk 91 Fl+k+y++++++++++++sw e+ ++fvv+ + efa+++Lp+yFkh+nf+SFvRQLn+YgF+k+ ++ weF+++ Fkkg+k Glyma.04G039600.1.p 25 FLTKTYQLVDEPTTDHIVSWGEDDTTFVVWRPPEFARDLLPNYFKHNNFSSFVRQLNTYGFRKIVPDR---------WEFANEFFKKGEK 105 9*****************************************************************99.........************* PP XXXXXXXXXXXX CS HSF_DNA-bind 92 ellekikrkkse 103 +ll++i+r+k++ Glyma.04G039600.1.p 106 HLLCEIHRRKTA 117 *********986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.10 | 6.6E-38 | 17 | 109 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SMART | SM00415 | 8.6E-60 | 21 | 114 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
SuperFamily | SSF46785 | 1.5E-33 | 22 | 114 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
Pfam | PF00447 | 1.8E-31 | 25 | 114 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 2.6E-19 | 25 | 48 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 2.6E-19 | 63 | 75 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PROSITE pattern | PS00434 | 0 | 64 | 88 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 2.6E-19 | 76 | 88 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 364 aa Download sequence Send to blast |
MAVLLDNCEG ILLSLDSHKS VPAPFLTKTY QLVDEPTTDH IVSWGEDDTT FVVWRPPEFA 60 RDLLPNYFKH NNFSSFVRQL NTYGFRKIVP DRWEFANEFF KKGEKHLLCE IHRRKTAQPQ 120 QGIMNHHHHH AHSPLGVNVN VPTFFPFSSR VSISTSNDSD DQSNWCDSPP RGATSLVNGA 180 AAANYNTSVT ALSEDNERLR RSNNMLMSEL AHMKKLYNDI IYFVQNHVKP VAPSNSYSSS 240 LLLCNTPSAT PISSANNVSM MQRPMNQLLG YYSTNPKQGA TQITQPQTYV VNSPTNTSRS 300 SITIFEGPAS SNINSCKTKL FGVSLQSKKR VHPDCGSNPE TNRARLVLEK DDLGLNLMPP 360 STC* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5d5u_B | 5e-21 | 21 | 116 | 26 | 131 | Heat shock factor protein 1 |
5d5v_B | 5e-21 | 21 | 116 | 26 | 131 | Heat shock factor protein 1 |
5d5v_D | 5e-21 | 21 | 116 | 26 | 131 | Heat shock factor protein 1 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Gma.3975 | 0.0 | leaf| meristem| root |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE). |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.04G039600.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | Z46955 | 0.0 | Z46955.1 G.max mRNA for heat shock transcription factor 31. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003523945.1 | 0.0 | heat stress transcription factor B-4 | ||||
Refseq | XP_028227656.1 | 0.0 | heat stress transcription factor B-4-like | ||||
Swissprot | Q9C635 | 1e-118 | HSFB4_ARATH; Heat stress transcription factor B-4 | ||||
TrEMBL | A0A445KVI8 | 0.0 | A0A445KVI8_GLYSO; Heat stress transcription factor B-4 | ||||
TrEMBL | Q00M81 | 0.0 | Q00M81_SOYBN; Heat shock transcription factor | ||||
STRING | GLYMA04G04200.1 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1612 | 33 | 93 | Representative plant | OGRP96 | 17 | 233 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G46264.1 | 1e-116 | heat shock transcription factor B4 |
Link Out ? help Back to Top | |
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Phytozome | Glyma.04G039600.1.p |
Entrez Gene | 100780813 |
Publications ? help Back to Top | |||
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