PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

MYB

Protein Properties

Length: 211aa MW: 23679.2 Da PI: 7.9928

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Glyma.04G036700.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	58.9	1.2e-18	34	79	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +g+W+++Ed +l ++v+q+G+++W++I+r++ gR++k+c++rw + Glyma.04G036700.1.p 34 KGPWSAQEDRILTRLVEQYGPRNWSLISRYIK-GRSGKSCRLRWCNQ 79 79***************************9.*********985 PP
2	Myb_DNA-binding	58	2.2e-18	88	130	3	47
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +++t+Ede ++ a++++G++ W+tIar ++ gRt++ +k++w++ Glyma.04G036700.1.p 88 PFSTQEDETIIAAHARYGNR-WATIARLLP-GRTDNAVKNHWNST 130 89****************.*****.*********986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	26.833	29	84	IPR017930	Myb domain
SuperFamily	SSF46689	2.33E-31	31	127	IPR009057	Homeodomain-like
SMART	SM00717	1.3E-16	33	82	IPR001005	SANT/Myb domain
Pfam	PF00249	2.0E-17	34	79	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	1.6E-24	35	87	IPR009057	Homeodomain-like
CDD	cd00167	8.03E-15	36	78	No hit	No description
SMART	SM00717	2.7E-15	85	133	IPR001005	SANT/Myb domain
PROSITE profile	PS51294	20.59	86	135	IPR017930	Myb domain
CDD	cd00167	1.09E-11	88	131	No hit	No description
Pfam	PF00249	4.4E-15	88	130	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	1.3E-22	88	134	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 211 aa Download sequence Send to blast
MEEMNRSSSS TSSSSHCCSL ESNHRSPNKP DRIKGPWSAQ EDRILTRLVE QYGPRNWSLI 60 SRYIKGRSGK SCRLRWCNQL SPTVEHRPFS TQEDETIIAA HARYGNRWAT IARLLPGRTD 120 NAVKNHWNST LKRRAKGINV NVNDADNEDD PLTALTLAPP GIANATLTED AVPDHRASPE 180 SAAEGFWDMM RDVIAREVRE YVSSNFSDNN *

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1h88_C	1e-41	30	135	54	159	MYB PROTO-ONCOGENE PROTEIN
1h89_C	1e-41	30	135	54	159	MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Gma.2663	0.0	cotyledon\| root

Expression -- Description ? help Back to Top
Source	Description
Uniprot	DEVELOPMENTAL STAGE: Expressed in leaves from the third leaf to rosette leaves from six-week old plants. Expression follows a development-dependent gradient in successive leaves. {ECO:0000269\|PubMed:9678577}.
Uniprot	TISSUE SPECIFICITY: Expressed in roots, stems and flowers. Expressed in dry seeds (PubMed:9678577). Expressed in root vasculature, root tips and lateral root (PubMed:17675404). {ECO:0000269\|PubMed:17675404, ECO:0000269\|PubMed:9678577}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor involved in auxin response. Functions in auxin signal transduction and modulates lateral root growth. Interacts with ARF response factors to promote auxin-responsive gene expression (PubMed:17675404). In response to auxin, binds sequence-specific motifs in the promoter of the auxin-responsive gene IAA19, and activates IAA19 transcription. The IAA19 transcription activation by MYB77 is enhanced by direct interaction between MYB77 and PYL8 (PubMed:24894996). {ECO:0000269\|PubMed:17675404, ECO:0000269\|PubMed:24894996}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Glyma.04G036700.1.p

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by auxin (PubMed:17675404). Down-regulated by potassium deprivation (PubMed:15173595). {ECO:0000269\|PubMed:15173595, ECO:0000269\|PubMed:17675404}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KT031187	0.0	KT031187.1 Glycine max clone HN_CCL_39 MYB/HD-like transcription factor (Glyma04g03910.1) mRNA, partial cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006578007.1	1e-156	transcription factor MYB77
Refseq	XP_028227613.1	1e-156	transcription factor MYB77-like
Swissprot	Q9SN12	1e-57	MYB77_ARATH; Transcription factor MYB77
TrEMBL	A0A445KVK9	1e-154	A0A445KVK9_GLYSO; Transcription factor MYB77
TrEMBL	I1JTH1	1e-154	I1JTH1_SOYBN; MYB/HD-like transcription factor
STRING	GLYMA04G03910.1	1e-155	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF5074	32	56
Representative plant	OGRP5	17	1784

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G50060.1	3e-59	myb domain protein 77

Link Out ? help Back to Top
Phytozome	Glyma.04G036700.1.p
Entrez Gene	100781727

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Chai C, et al. Soybean transcription factor ORFeome associated with drought resistance: a valuable resource to accelerate research on abiotic stress resistance. BMC Genomics, 2015. 16: p. 596 [PMID:26268547]