PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.04G033300.1.p
Common NameGLYMA_04G033300, LOC100800089
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family C2H2
Protein Properties Length: 474aa    MW: 50366.8 Da    PI: 9.2657
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.04G033300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.31.3e-055678123
                         EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                         ++C++C+k F r  nL+ H r H
  Glyma.04G033300.1.p 56 FVCEICNKGFQRDQNLQLHRRGH 78
                         89*******************88 PP
2zf-C2H213.60.0002132154123
                          EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                          ++C+ C+k +  +s+ k H++t+
  Glyma.04G033300.1.p 132 WQCERCSKKYAVHSDWKAHMKTC 154
                          58*******************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576677.48E-75578No hitNo description
Gene3DG3DSA:3.30.160.601.5E-55578IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF121717.5E-55678IPR022755Zinc finger, double-stranded RNA binding
SMARTSM003550.0175678IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.9495678IPR007087Zinc finger, C2H2
PROSITE patternPS0002805878IPR007087Zinc finger, C2H2
SMARTSM0035522097127IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.601.9E-4120153IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576677.48E-7127153No hitNo description
SMARTSM0035584132152IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 474 aa     Download sequence    Send to blast
MTEPQNPSPL THSPALEITP QPLLPPKRKR SLPGMPDPDA EVIALSPKTL LATNRFVCEI  60
CNKGFQRDQN LQLHRRGHNL PWKLRQRGST EPRKKAYVCP EPSCVHHNPA RALGDLTGIK  120
KHFCRKHGEK KWQCERCSKK YAVHSDWKAH MKTCGSREYR CDCGTLFSRR DSFITHRAFC  180
DVLAQESARA QAQAQGQGGS NSKVVEASSP PTPPLTPSAS VVPPTLSIQS SEIPENPSTK  240
LSPTSPNATA CFVTSSSSTP SNSTTCTTVF ASVLAPSPTT PSTPQSPSNS TSSFTNLISN  300
LARSQNPNTI MRESTSLSLS TPLYLSNNDP LHYTASPQPA LSATALLQKA AQMGASNASL  360
LRGLGLATTT SSSSSFGKDE GFNINATTTL QWNGQVKQEN HPVVDNLGLG LLCGSGSVPD  420
VMMAPSTPFV GQPMTRDLLG LSIGGGGSRG GLSALLTSFG GNFDSPGEGG VHR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C8e-33128192367Zinc finger protein JACKDAW
5b3h_F8e-33128192367Zinc finger protein JACKDAW
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18294KLRQRGSTEPRKK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.206510.0somatic embryo
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Strongly up-regulated during seed development. {ECO:0000269|PubMed:21571950}.
UniprotTISSUE SPECIFICITY: At 3 days post anthesis (DPA), expressed in the chalazal endosperm region. By 6 DPA, expressed in the endosperm and embryo. In fully germinated seed, strongest expression in the root tip and not detected in the cotyledons. In 4-days old seedlings, restricted to the vasculature of the cotyledons, the shoot apical meristem region, and the root tip. By 8 days, restricted to newly emerged leaves. {ECO:0000269|PubMed:21571950}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor promoting the transition to germination by regulating light and hormonal signaling during seed maturation (PubMed:21571950). Acts as a positive regulator of phytochrome and/or gibberellin action (PubMed:21571950, PubMed:25035403). {ECO:0000269|PubMed:21571950, ECO:0000269|PubMed:25035403}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.04G033300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150351e-136AP015035.1 Vigna angularis var. angularis DNA, chromosome 2, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003523580.10.0protein indeterminate-domain 2
SwissprotQ9LVQ71e-125IDD1_ARATH; Zinc finger protein ENHYDROUS
TrEMBLI1JTC70.0I1JTC7_SOYBN; Uncharacterized protein
STRINGGLYMA04G03560.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF22183286
Representative plantOGRP9516242
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66730.16e-99C2H2-like zinc finger protein
Publications ? help Back to Top
  1. Fukazawa J, et al.
    DELLAs function as coactivators of GAI-ASSOCIATED FACTOR1 in regulation of gibberellin homeostasis and signaling in Arabidopsis.
    Plant Cell, 2014. 26(7): p. 2920-38
    [PMID:25035403]
  2. Moreno-Risueno MA, et al.
    Transcriptional control of tissue formation throughout root development.
    Science, 2015. 350(6259): p. 426-30
    [PMID:26494755]