PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.04G029200.2.p
Common NameGLYMA_04G029200, LOC100792161
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family TALE
Protein Properties Length: 357aa    MW: 40371.5 Da    PI: 6.9069
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.04G029200.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox30.56.1e-102793161954
                          HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
             Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                          Fe   ++yp+ +e+  LA+++gLt++qV++WF N R +
  Glyma.04G029200.2.p 279 FEHflHPYPNDSEKLMLASQTGLTKNQVSNWFINARVR 316
                          564459******************************88 PP
2BELL103.31.7e-33142212272
                 BELL   2 rqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                          ++e+q+k+a+L++ll+eV+ r ++y++q++ v+ssFe++aglg+ak Yt+lAl+a+SrhF +L+dai +qi
  Glyma.04G029200.2.p 142 KHEHQIKIARLITLLDEVEGRCEKYYHQMEEVVSSFEMIAGLGAAKCYTALALQAMSRHFCSLRDAILSQI 212
                          79*******************************************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005741.6E-3172210IPR006563POX domain
PfamPF075264.1E-4077208IPR006563POX domain
CDDcd000862.60E-11260321No hitNo description
SMARTSM003891.1E-9260324IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.4E-27265326IPR009057Homeodomain-like
SuperFamilySSF466898.13E-18266327IPR009057Homeodomain-like
PfamPF059203.7E-17277316IPR008422Homeobox KN domain
PROSITE profilePS5007111.888279320IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 357 aa     Download sequence    Send to blast
MGLHATWHPH QRPLNPGLIN PNYFMSGQEA REPCNNPPVE QHNITSDYFY NTGSGTFASS  60
SPLNNRSPNS TSSYAAVIGN SRYLKPVQSL LEDLVDVGGN VVDRINEKYA EKLFRGSRGS  120
ARTLSSELKA ELGNNGHLLA DKHEHQIKIA RLITLLDEVE GRCEKYYHQM EEVVSSFEMI  180
AGLGAAKCYT ALALQAMSRH FCSLRDAILS QINAEKRKLF QDLPKISSGL SQLSLFDRDS  240
RQSRMSLQQL GVIRSQRQVW RPIRGLPETS VAILRSWLFE HFLHPYPNDS EKLMLASQTG  300
LTKNQVSNWF INARVRLWKP MIEEMYKEEF GEFSEDSNPA GNNYLTREDT TDCVED*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3k2a_A2e-16266324563Homeobox protein Meis2
3k2a_B2e-16266324563Homeobox protein Meis2
4xrm_A2e-16266324563Homeobox protein Meis2
4xrm_B2e-16266324563Homeobox protein Meis2
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.04G029200.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006577983.10.0BEL1-like homeodomain protein 11 isoform X3
SwissprotQ1PFD11e-105BLH11_ARATH; BEL1-like homeodomain protein 11
TrEMBLK7KHT60.0K7KHT6_SOYBN; Uncharacterized protein
STRINGGLYMA04G03160.20.0(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75430.11e-107BEL1-like homeodomain 11