PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.04G029200.1.p
Common NameGLYMA_04G029200, LOC100792161
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family TALE
Protein Properties Length: 441aa    MW: 49487.4 Da    PI: 6.306
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.04G029200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox30.18.1e-103634001954
                          HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
             Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                          Fe   ++yp+ +e+  LA+++gLt++qV++WF N R +
  Glyma.04G029200.1.p 363 FEHflHPYPNDSEKLMLASQTGLTKNQVSNWFINARVR 400
                          554459******************************88 PP
2BELL102.92.3e-33226296272
                 BELL   2 rqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                          ++e+q+k+a+L++ll+eV+ r ++y++q++ v+ssFe++aglg+ak Yt+lAl+a+SrhF +L+dai +qi
  Glyma.04G029200.1.p 226 KHEHQIKIARLITLLDEVEGRCEKYYHQMEEVVSSFEMIAGLGAAKCYTALALQAMSRHFCSLRDAILSQI 296
                          79*******************************************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005741.6E-31156294IPR006563POX domain
PfamPF075266.4E-40161292IPR006563POX domain
SMARTSM003891.1E-9344408IPR001356Homeobox domain
CDDcd000861.52E-11344405No hitNo description
Gene3DG3DSA:1.10.10.601.9E-27349410IPR009057Homeodomain-like
SuperFamilySSF466891.11E-17350411IPR009057Homeodomain-like
PfamPF059204.9E-17361400IPR008422Homeobox KN domain
PROSITE profilePS5007111.888363404IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 441 aa     Download sequence    Send to blast
MSNSITYHQN QFENQELDAY GSSMRLNNAF PEALGAFPTS IGVVAEGSEI SHTRHLMDLL  60
GAANESNHHQ TAQGLSLSLG SHMLVPSDEY RHPHQRPLNP GLINPNYFMS GQEAREPCNN  120
PPVEQHNITS DYFYNTGSGT FASSSPLNNR SPNSTSSYAA VIGNSRYLKP VQSLLEDLVD  180
VGGNVVDRIN EKYAEKLFRG SRGSARTLSS ELKAELGNNG HLLADKHEHQ IKIARLITLL  240
DEVEGRCEKY YHQMEEVVSS FEMIAGLGAA KCYTALALQA MSRHFCSLRD AILSQINAEK  300
RKLFQDLPKI SSGLSQLSLF DRDSRQSRMS LQQLGVIRSQ RQVWRPIRGL PETSVAILRS  360
WLFEHFLHPY PNDSEKLMLA SQTGLTKNQV SNWFINARVR LWKPMIEEMY KEEFGEFSED  420
SNPAGNNYLT REDTTDCVED *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4xrm_A2e-16350408563Homeobox protein Meis2
4xrm_B2e-16350408563Homeobox protein Meis2
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.04G029200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003523567.10.0BEL1-like homeodomain protein 11 isoform X1
SwissprotQ1PFD11e-105BLH11_ARATH; BEL1-like homeodomain protein 11
TrEMBLA0A0R0K2Y70.0A0A0R0K2Y7_SOYBN; Uncharacterized protein
STRINGGLYMA06G03210.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF126452329
Representative plantOGRP13316172
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75430.11e-106BEL1-like homeodomain 11