PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.04G029100.3.p | ||||||||
Common Name | GLYMA_04G029100, LOC100791641 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | TALE | ||||||||
Protein Properties | Length: 647aa MW: 71744.7 Da PI: 5.2771 | ||||||||
Description | TALE family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 28.7 | 2.2e-09 | 399 | 436 | 19 | 54 |
HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 Fe ++yp+ +e+ LA+++gLt +qV +WF N R + Glyma.04G029100.3.p 399 FEHflHPYPKDSEKIMLARQTGLTRNQVANWFINARVR 436 665559******************************88 PP | |||||||
2 | BELL | 125.6 | 1.9e-40 | 270 | 341 | 1 | 72 |
BELL 1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 erq l kk+kLls+l+eVdkrY+qy++q+q+v+ssF++vag+g+a+pYt+lAl++iSrhFrcL+dai++qi Glyma.04G029100.3.p 270 ERQTLLDKKTKLLSMLDEVDKRYRQYCHQMQIVVSSFDMVAGCGAAEPYTTLALRTISRHFRCLRDAISGQI 341 6888999****************************************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00574 | 6.5E-61 | 189 | 339 | IPR006563 | POX domain |
Pfam | PF07526 | 2.9E-50 | 195 | 338 | IPR006563 | POX domain |
PROSITE profile | PS50071 | 12.438 | 377 | 440 | IPR001356 | Homeobox domain |
SMART | SM00389 | 1.6E-9 | 380 | 444 | IPR001356 | Homeobox domain |
CDD | cd00086 | 1.25E-12 | 380 | 441 | No hit | No description |
SuperFamily | SSF46689 | 2.35E-17 | 381 | 447 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 2.7E-28 | 383 | 446 | IPR009057 | Homeodomain-like |
Pfam | PF05920 | 3.1E-17 | 397 | 436 | IPR008422 | Homeobox KN domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 647 aa Download sequence Send to blast |
MYPNQAFSLG SYAEMMSGTS LFPHDYSETV GGGQNEVKFI TAMGETVTMH SINGHSNAAS 60 GDPACNSFAG DSHVVSRTQM GMVDSEQNIN CQGLSLSLGT LMPSNASVSP FQYQYHDTGL 120 LPLMNDFPNI KGTMSLKDDE ANNLHGEFRS VECMASVSSG GFHDMIKKEG FYNPNHPSMC 180 LKEVPSDLPG YSNSILNSQY LKAAQELLDE IVSVQKALKQ SGMEKQENNR DIGLDGSKDA 240 DGKSTSQSMQ MSSAPNGSSA NASSDLSSAE RQTLLDKKTK LLSMLDEVDK RYRQYCHQMQ 300 IVVSSFDMVA GCGAAEPYTT LALRTISRHF RCLRDAISGQ IQVTQRSLGE QEGIPRLRYV 360 DQQLRQQKAL QQLGVMRQAW RPQRGLPESS VSILRAWLFE HFLHPYPKDS EKIMLARQTG 420 LTRNQVANWF INARVRLWKP MVEEMYKEEF GDSEMNCNLS SENNTVKGKR DDVQESDNIN 480 NNNNKWEESQ DNLVTVDSVQ VQPQAEMDRV VNVENVVMNS GTGKLQGDQN QQRLGLNNNN 540 NSSSNFYSIS TNENGGDGGL MGTSTHATYD LSELGNFTVG SHVSLALELR NCENDGFAMS 600 DDAIQKRRKQ TLSSSPETDL LDYHFTDSGK QQHRFGNPHL LHEFVV* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4xrs_A | 2e-16 | 386 | 443 | 1 | 58 | Homeobox protein Meis1 |
4xrs_B | 2e-16 | 386 | 443 | 1 | 58 | Homeobox protein Meis1 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Gma.20944 | 0.0 | root |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that is responsive of the nuclear import of SHOOT MERISTEMLESS (STM). {ECO:0000269|PubMed:16513846}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.04G029100.3.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003523566.1 | 0.0 | BEL1-like homeodomain protein 7 isoform X1 | ||||
Refseq | XP_006577981.1 | 0.0 | BEL1-like homeodomain protein 7 isoform X1 | ||||
Refseq | XP_006577982.1 | 0.0 | BEL1-like homeodomain protein 7 isoform X1 | ||||
Refseq | XP_028227525.1 | 0.0 | BEL1-like homeodomain protein 7 isoform X1 | ||||
Refseq | XP_028227526.1 | 0.0 | BEL1-like homeodomain protein 7 isoform X1 | ||||
Swissprot | Q9FWS9 | 1e-112 | BLH3_ARATH; BEL1-like homeodomain protein 3 | ||||
TrEMBL | A0A445KUQ6 | 0.0 | A0A445KUQ6_GLYSO; BEL1-like homeodomain protein 3 isoform A | ||||
TrEMBL | K7KHT4 | 0.0 | K7KHT4_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA04G03150.2 | 0.0 | (Glycine max) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G75410.2 | 1e-104 | BEL1-like homeodomain 3 |
Link Out ? help Back to Top | |
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Phytozome | Glyma.04G029100.3.p |
Entrez Gene | 100791641 |
Publications ? help Back to Top | |||
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