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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
Glyma.04G027400.1.p |
| Common Name | GLYMA_04G027400, LOC100818588 |
| Organism |
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| Taxonomic ID |
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| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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| Family |
SRS |
| Protein Properties |
Length: 306aa MW: 33185.7 Da PI: 6.8469 |
| Description |
SRS family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Glyma.04G027400.1.p | genome | JGI | View CDS |
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| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | DUF702 | 215.7 | 1.1e-66 | 98 | 245 | 3 | 154 |
DUF702 3 sgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasa.aeaaskrkrelkskkqsalsstkl 91
s +++CqdCGnqakkdCah RCRtCCksrgf+C+thvkstWvpaakrrer+qqla ++ +++ + ++ +kr++ +++s++
Glyma.04G027400.1.p 98 SMSMNCQDCGNQAKKDCAHLRCRTCCKSRGFQCQTHVKSTWVPAAKRRERHQQLAELQLQQQFRGvGDNIPKRHHP-----DTTTSTQLA 182
6789**************************************************9998777654424444444433.....333333333 PP
DUF702 92 ssaeskkeletsslPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGlee 154
s ++ + le ++P+evs++a+frcvrvs+vd ++e++aYqt+v+igGhvfkG+LydqG+e+
Glyma.04G027400.1.p 183 SAPQPVTGLELGQFPAEVSTSALFRCVRVSAVDASDEQYAYQTSVNIGGHVFKGFLYDQGPES 245
444556789999*************************************************96 PP
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| Sequence ? help Back to Top |
| Protein Sequence Length: 306 aa
Download sequence Send
to blast |
MAGFFSLGGT QNKEEEEVEK GDKNNLLLLR NEEIYNNKGG FEIWPQSSSS YHLSNYFAFG 60
VGPSRRNRSE DVSLCVSEDE STRFGLSVMR TGGSSSSSMS MNCQDCGNQA KKDCAHLRCR 120
TCCKSRGFQC QTHVKSTWVP AAKRRERHQQ LAELQLQQQF RGVGDNIPKR HHPDTTTSTQ 180
LASAPQPVTG LELGQFPAEV STSALFRCVR VSAVDASDEQ YAYQTSVNIG GHVFKGFLYD 240
QGPESSYTGA AAEGSSGGEP QQLGFITAAA TTATTSGNSP FDPSLYPAPL NAFMAGTQFF 300
QPPRS*
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| Functional Description ? help
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| Source |
Description |
| UniProt | Transcription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influences vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). {ECO:0000269|PubMed:16740146}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AP015035 | 1e-103 | AP015035.1 Vigna angularis var. angularis DNA, chromosome 2, almost complete sequence, cultivar: Shumari. |
