PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.04G027000.2.p | ||||||||
Common Name | GLYMA_04G027000, LOC100785978 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | DBB | ||||||||
Protein Properties | Length: 195aa MW: 21397.3 Da PI: 7.2577 | ||||||||
Description | DBB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-B_box | 21.7 | 4.3e-07 | 4 | 43 | 5 | 38 |
zf-B_box 5 kCpeHeekelqlfCedCqqllCedClleeHkg......Ht 38 C+ ++++++++fC+ ++ lC+ C H+ H+ Glyma.04G027000.2.p 4 HCDVCNKHQASFFCTADEAALCDGCDHRVHHAnklaskHQ 43 7******99*******************964446776776 PP | |||||||
2 | zf-B_box | 24.7 | 4.9e-08 | 56 | 95 | 4 | 37 |
zf-B_box 4 rkCpeHeekelqlfCedCqqllCedClleeHkg......H 37 + C+ ++e ++ fC++++ lC++C + +H+ H Glyma.04G027000.2.p 56 PLCDVCQERRAFVFCQQDRAILCKECDVPIHSAndltknH 95 57*****************************655555556 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50119 | 10.879 | 1 | 47 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 1.74E-5 | 3 | 47 | No hit | No description |
Pfam | PF00643 | 2.0E-5 | 4 | 44 | IPR000315 | B-box-type zinc finger |
SMART | SM00336 | 1.7E-6 | 4 | 47 | IPR000315 | B-box-type zinc finger |
SMART | SM00336 | 9.6E-15 | 53 | 100 | IPR000315 | B-box-type zinc finger |
PROSITE profile | PS50119 | 9.513 | 53 | 100 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 3.50E-8 | 56 | 100 | No hit | No description |
Pfam | PF00643 | 2.6E-6 | 56 | 96 | IPR000315 | B-box-type zinc finger |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009640 | Biological Process | photomorphogenesis | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0000989 | Molecular Function | transcription factor activity, transcription factor binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 195 aa Download sequence Send to blast |
MKIHCDVCNK HQASFFCTAD EAALCDGCDH RVHHANKLAS KHQRFSLTHP SAKHFPLCDV 60 CQERRAFVFC QQDRAILCKE CDVPIHSAND LTKNHSRFLL TGIKFSASAT PYDYSSPPPP 120 PPPPPPKRNP VLDSPSTPSP PKPGGNSLTN EEEPGFTGSS ISEYLINSIP GMKFEDFLDS 180 HSLPFACSKQ LIIV* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Gma.44981 | 0.0 | flower| root |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that acts as positive regulator of seedling photomorphogenesis (PubMed:17965270). Acts downstream of COP1 and play an important role in early and long-term adjustment of the shade avoidance syndrome (SAS) responses in natural environments (PubMed:21070414). {ECO:0000269|PubMed:17965270, ECO:0000269|PubMed:21070414}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.04G027000.2.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015035 | 2e-49 | AP015035.1 Vigna angularis var. angularis DNA, chromosome 2, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006577979.1 | 1e-141 | B-box zinc finger protein 21 isoform X2 | ||||
Swissprot | Q9LQZ7 | 4e-62 | BBX21_ARATH; B-box zinc finger protein 21 | ||||
TrEMBL | I1JT59 | 1e-139 | I1JT59_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA04G02960.1 | 1e-137 | (Glycine max) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G75540.1 | 2e-59 | salt tolerance homolog2 |
Link Out ? help Back to Top | |
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Phytozome | Glyma.04G027000.2.p |
Entrez Gene | 100785978 |