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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
Glyma.04G026300.1.p |
| Common Name | GLYMA_04G026300, LOC100783502 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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| Family |
BBR-BPC |
| Protein Properties |
Length: 339aa MW: 37449.5 Da PI: 9.9657 |
| Description |
BBR-BPC family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Glyma.04G026300.1.p | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | GAGA_bind | 407.4 | 1.7e-124 | 1 | 338 | 1 | 301 |
GAGA_bind 1 mdddgsre..rnkg..yyepa..aslkenl..glqlmssiaerdakirernlalsekkaavaerdmaflqrdkalaernkalverdnkll 82
mdd g+re r+k+ +y++a + l +++ +q+m+++aerda+i+ernla+sekkaa+aerdmaf+qrd+a+aern+a++erdn+++
Glyma.04G026300.1.p 1 MDDAGHREngRHKAadQYKSAqgQWLMQHQpsMKQIMAIMAERDAAIQERNLAISEKKAAYAERDMAFMQRDAAIAERNNAILERDNAIA 90
99****9999999889999555544444432145******************************************************** PP
GAGA_bind 83 alllvensla....salpvgvqvlsgtksidslqq.lse.pqledsavelreeeklealpieeaaeeakekkkkkkrqrakkpkekkakk 166
+l+++e+sl+ ++p+g+q+++g+k+i++ qq +++ p+++d ++ +re+++++alp +e+ k++ rak+pke+k+ +
Glyma.04G026300.1.p 91 TLQYRETSLSsgsmPSCPPGCQISRGVKHIHHPQQqVHHiPNMGDASYSTREMHTTDALPAAP---IPSEAGKPR---RAKRPKEPKSAS 174
********99888889*****************9955669********************554...444555554...677999999999 PP
GAGA_bind 167 kkkksekskkkvkkesader.............................skaekksidlvlngvslDestlPvPvCsCtGalrqCYkWGn 227
++kk++k+ kkvkkes+d + ska++k +dl+ln+v++Dest+P+PvCsCtG+lrqCYkWGn
Glyma.04G026300.1.p 175 PNKKTSKPAKKVKKESEDLNkvmfgkshewksgqemvnggddlnkqltvSKADWKGQDLGLNQVAYDESTMPAPVCSCTGVLRQCYKWGN 264
999999999*******995559******************************************************************** PP
GAGA_bind 228 GGWqSaCCtttiSvyPLPvstkrrgaRiagrKmSqgafkklLekLaaeGydlsnpvDLkdhWAkHGtnkfvtir 301
GGWqSaCCttt+S+yPLP+++++r+aR++grKmS++af+klL++LaaeG+dlsnpvDLkdhWAkHGtn+++ti+
Glyma.04G026300.1.p 265 GGWQSACCTTTLSMYPLPAVPNKRHARVGGRKMSGSAFNKLLSRLAAEGHDLSNPVDLKDHWAKHGTNRYITIK 338
*************************************************************************8 PP
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| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0009723 | Biological Process | response to ethylene |
| GO:0005730 | Cellular Component | nucleolus |
| GO:0003677 | Molecular Function | DNA binding |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0042803 | Molecular Function | protein homodimerization activity |
| Sequence ? help Back to Top |
| Protein Sequence Length: 339 aa
Download sequence Send
to blast |
MDDAGHRENG RHKAADQYKS AQGQWLMQHQ PSMKQIMAIM AERDAAIQER NLAISEKKAA 60
YAERDMAFMQ RDAAIAERNN AILERDNAIA TLQYRETSLS SGSMPSCPPG CQISRGVKHI 120
HHPQQQVHHI PNMGDASYST REMHTTDALP AAPIPSEAGK PRRAKRPKEP KSASPNKKTS 180
KPAKKVKKES EDLNKVMFGK SHEWKSGQEM VNGGDDLNKQ LTVSKADWKG QDLGLNQVAY 240
DESTMPAPVC SCTGVLRQCY KWGNGGWQSA CCTTTLSMYP LPAVPNKRHA RVGGRKMSGS 300
AFNKLLSRLA AEGHDLSNPV DLKDHWAKHG TNRYITIK*
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| Expression -- UniGene
? help Back to Top |
| UniGene ID |
E-value |
Expressed in |
| Gma.13993 | 0.0 | cotyledon| flower| hypocotyl| leaf| meristem| root| seed coat| somatic embryo| stem |
| Expression --
Description ? help
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| Source |
Description |
| Uniprot | TISSUE SPECIFICITY: Expressed in seedlings, leaves and pistils. Detected in the base of flowers and tips of carpels, in sepal vasculature, in young rosette, in the lateral and tip of primary roots, and in ovule at the exception of the outer integument. {ECO:0000269|PubMed:14731261, ECO:0000269|PubMed:21435046}. |
| Functional Description ? help
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| Source |
Description |
| UniProt | Transcriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. {ECO:0000269|PubMed:14731261}. |
