 |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| TF ID | Glyma.04G017400.7.p | ||||||||
| Common Name | GLYMA_04G017400, LOC100790922 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
|
||||||||
| Family | Nin-like | ||||||||
| Protein Properties | Length: 909aa MW: 100821 Da PI: 5.9215 | ||||||||
| Description | Nin-like family protein | ||||||||
| Gene Model |
|
||||||||
| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | RWP-RK | 92.2 | 3.8e-29 | 592 | 643 | 1 | 52 |
RWP-RK 1 aekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52
aek+i+l++l++yF++++kdAAk++gvc+T+LKriCRq+GIkRWP+Rkik++
Glyma.04G017400.7.p 592 AEKTITLQVLRQYFAGSLKDAAKNIGVCTTTLKRICRQHGIKRWPSRKIKKV 643
589***********************************************97 PP
| |||||||
| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| PROSITE profile | PS51519 | 17.803 | 582 | 663 | IPR003035 | RWP-RK domain |
| Pfam | PF02042 | 6.4E-25 | 595 | 643 | IPR003035 | RWP-RK domain |
| SuperFamily | SSF54277 | 1.08E-23 | 814 | 899 | No hit | No description |
| SMART | SM00666 | 2.8E-25 | 814 | 897 | IPR000270 | PB1 domain |
| Gene3D | G3DSA:3.10.20.240 | 2.2E-22 | 814 | 894 | No hit | No description |
| PROSITE profile | PS51745 | 27.102 | 814 | 897 | IPR000270 | PB1 domain |
| CDD | cd06407 | 3.44E-43 | 815 | 896 | No hit | No description |
| Pfam | PF00564 | 8.7E-19 | 815 | 896 | IPR000270 | PB1 domain |
| Gene Ontology ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| GO Term | GO Category | GO Description | ||||
| GO:0005515 | Molecular Function | protein binding | ||||
| Sequence ? help Back to Top |
|---|
| Protein Sequence Length: 909 aa Download sequence Send to blast |
MGDSGVTSSA ATMMEAPPPD GTTTTATSMD FDYMGEFFLD GCWLEASADV SDFLLQSPSF 60 SNPLFDPSLS WPALETNHNK SQDAAFGTQQ ESHNNIVSVV AGGGYSQQFQ SETHSVEGVS 120 EGVRRWWFAP SPIPSPGPGP SIMEKLIRAL MWIKDYNRNK DMLIQIWVPI HKEGRPILAA 180 DDLLFSLESK SLNLAKYREI SVTYEFSAEE SDSKELARGL PGRVFRYKVP EWTPDVRFFR 240 SDEYPRVDHA QEYDVRGTVA VPIFEQGSKT CLGVIEVVMT TQQINYGPEL ESVCKALEAV 300 DLRSSKQLSI QNVKQACNRT YEAALPEIYE VLRSACEMHR LPLAQTWVPC VQQGKEGCRH 360 SEDNYLLCIS PVEHACYVGD PSIRSFHEAC TEHHLLKGEG VAGGAFMTNQ PCFSDDITSL 420 SKKDYPLSHY ARLFGLHAAV AIRLRSIYNS TDDFVLEFFL PVDCNDSEEQ RKMLTALSII 480 IQRVCRSLRV IRDKELEEAN LSVDEVIALA DSGFARNAIF SEPQYKGMVA SLDAEEKSSE 540 TMGRKFSDLR QQQESPILKG NLDCVKECST SVEGNLSSLG TNKTGERRRA KAEKTITLQV 600 LRQYFAGSLK DAAKNIGVCT TTLKRICRQH GIKRWPSRKI KKVGHSLQKL QLVINSVQGA 660 SGAFQIGSFY SNFPDLASPN LSGTGFFSTL NQSDYPNSTS TQPDHGSLSP EGASKSPSSS 720 CSQSSISSHS CSSMSELQQH RTANGAGNKV STTVSEDSAG VVLKRISSEA ELKSLSQDRA 780 KLLPRSQSQE TLGEHPKTQY QQPLLKTSSS KVDSHRVKVA YGDEKTRFRM PKSWGYEDLL 840 QEIARRFNVS DMSKFDVKYL DDDCEWVLLT CDADLEECID VCQSSESGTI KLSLQPSSHS 900 MRSSLEFR* |
| Expression -- UniGene ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| UniGene ID | E-value | Expressed in | ||||
| Gma.28339 | 0.0 | root| stem | ||||
| Functional Description ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Description | |||||
| UniProt | Probable transcription factor. {ECO:0000250}. | |||||
| Cis-element ? help Back to Top | |
|---|---|
| Source | Link |
| PlantRegMap | Glyma.04G017400.7.p |
| Regulation -- PlantRegMap ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Upstream Regulator | Target Gene | ||||
| PlantRegMap | Retrieve | - | ||||
| Annotation -- Nucleotide ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | |||
| GenBank | AC235387 | 0.0 | AC235387.1 Glycine max strain Williams 82 clone GM_WBb0115J10, complete sequence. | |||
| Annotation -- Protein ? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | ||||
| Refseq | XP_003523077.1 | 0.0 | protein NLP4 isoform X1 | ||||
| Refseq | XP_006577935.1 | 0.0 | protein NLP4 isoform X1 | ||||
| Refseq | XP_006577936.1 | 0.0 | protein NLP4 isoform X1 | ||||
| Refseq | XP_006577937.1 | 0.0 | protein NLP4 isoform X1 | ||||
| Refseq | XP_006577938.1 | 0.0 | protein NLP4 isoform X1 | ||||
| Refseq | XP_006577939.1 | 0.0 | protein NLP4 isoform X1 | ||||
| Refseq | XP_014629894.1 | 0.0 | protein NLP4 isoform X1 | ||||
| Refseq | XP_028227375.1 | 0.0 | protein NLP4-like isoform X1 | ||||
| Refseq | XP_028227376.1 | 0.0 | protein NLP4-like isoform X1 | ||||
| Refseq | XP_028227377.1 | 0.0 | protein NLP4-like isoform X1 | ||||
| Refseq | XP_028227378.1 | 0.0 | protein NLP4-like isoform X1 | ||||
| Refseq | XP_028227379.1 | 0.0 | protein NLP4-like isoform X1 | ||||
| Refseq | XP_028227380.1 | 0.0 | protein NLP4-like isoform X1 | ||||
| Refseq | XP_028227381.1 | 0.0 | protein NLP4-like isoform X1 | ||||
| Refseq | XP_028227382.1 | 0.0 | protein NLP4-like isoform X1 | ||||
| Swissprot | Q9LE38 | 0.0 | NLP4_ARATH; Protein NLP4 | ||||
| TrEMBL | K7KHM7 | 0.0 | K7KHM7_SOYBN; Uncharacterized protein | ||||
| STRING | GLYMA04G01910.3 | 0.0 | (Glycine max) | ||||
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT1G20640.2 | 0.0 | Nin-like family protein | ||||
| Link Out ? help Back to Top | |
|---|---|
| Phytozome | Glyma.04G017400.7.p |
| Entrez Gene | 100790922 |
| ©2010-2022, Center
for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
Supported By
|