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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.04G012600.2.p | ||||||||
Common Name | GLYMA_04G012600, LOC100805232 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | MYB_related | ||||||||
Protein Properties | Length: 95aa MW: 10704.1 Da PI: 9.4584 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 29.9 | 1.3e-09 | 15 | 59 | 3 | 45 |
SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwq 45 WT+ + + +a +++ ++ +W+ +a+ +g g+++ ++k ++q Glyma.04G012600.2.p 15 CWTPKQNKVFEKALAKYDKDtpdRWHNVAKAIG-GKSEDDVKRHYQ 59 6********************************.***********9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00717 | 8.2E-7 | 12 | 64 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 4.34E-13 | 14 | 70 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 1.9E-7 | 15 | 59 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.30E-7 | 16 | 62 | No hit | No description |
PROSITE profile | PS50090 | 6.539 | 16 | 62 | IPR017877 | Myb-like domain |
Gene3D | G3DSA:1.10.10.60 | 7.1E-5 | 16 | 62 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 95 aa Download sequence Send to blast |
MASSTLSKQK PYDSCWTPKQ NKVFEKALAK YDKDTPDRWH NVAKAIGGKS EDDVKRHYQI 60 LLEDLRHIES GHVPIPNYKS TPTTFPLSTT LVGF* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2cjj_A | 8e-29 | 3 | 81 | 2 | 76 | RADIALIS |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in the micropylar endosperm surrounding globular-stage embryos but no expression was detected elsewhere, including floral tissues. {ECO:0000269|PubMed:17672842}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.04G012600.2.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015035 | 2e-75 | AP015035.1 Vigna angularis var. angularis DNA, chromosome 2, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006577923.1 | 8e-66 | protein RADIALIS-like 3 isoform X2 | ||||
Refseq | XP_028226976.1 | 8e-66 | protein RADIALIS-like 3 isoform X2 | ||||
Swissprot | Q1A173 | 2e-32 | RADL6_ARATH; Protein RADIALIS-like 6 | ||||
TrEMBL | A0A445KUU8 | 2e-64 | A0A445KUU8_GLYSO; Protein RADIALIS-like 6 isoform B | ||||
TrEMBL | K7KHJ6 | 2e-64 | K7KHJ6_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA04G01410.2 | 3e-65 | (Glycine max) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G75250.1 | 9e-35 | RAD-like 6 |
Link Out ? help Back to Top | |
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Phytozome | Glyma.04G012600.2.p |
Entrez Gene | 100805232 |