PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.04G009300.1.p | ||||||||
Common Name | GLYMA_04G009300 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | SRS | ||||||||
Protein Properties | Length: 211aa MW: 23087.5 Da PI: 7.9448 | ||||||||
Description | SRS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF702 | 82.8 | 8.6e-26 | 12 | 62 | 3 | 53 |
DUF702 3 sgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerq 53 s +++C+dCGnqakk+C+++RCRtCCk++gf+C+th+kstW p+++ r r+ Glyma.04G009300.1.p 12 SRGSKCHDCGNQAKKECSYSRCRTCCKNKGFHCQTHIKSTWTPVDNIRRRH 62 56789***************************************9877764 PP | |||||||
2 | DUF702 | 74.2 | 4e-23 | 66 | 126 | 94 | 154 |
DUF702 94 aeskkeletsslPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGlee 154 ++++ + ++P +s+a+frcv+v+s+dd+ e+aYqt+v+igGhvf+G+LydqG+++ Glyma.04G009300.1.p 66 NHNPYSGLELKFPGATNSMAIFRCVKVRSMDDAVYEIAYQTSVNIGGHVFNGLLYDQGPDQ 126 44444445567************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF05142 | 4.8E-21 | 14 | 62 | IPR007818 | Protein of unknown function DUF702 |
TIGRFAMs | TIGR01623 | 7.9E-24 | 16 | 55 | IPR006510 | Zinc finger, lateral root primordium type 1 |
Pfam | PF05142 | 1.5E-18 | 75 | 125 | IPR007818 | Protein of unknown function DUF702 |
TIGRFAMs | TIGR01624 | 5.5E-21 | 76 | 124 | IPR006511 | Lateral Root Primordium type 1, C-terminal |
Sequence ? help Back to Top |
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Protein Sequence Length: 211 aa Download sequence Send to blast |
MQRATQQGIS SSRGSKCHDC GNQAKKECSY SRCRTCCKNK GFHCQTHIKS TWTPVDNIRR 60 RHIPQNHNPY SGLELKFPGA TNSMAIFRCV KVRSMDDAVY EIAYQTSVNI GGHVFNGLLY 120 DQGPDQSYNN NCKGESSTSL VDQQQNNLGF VNINNGSIQS RDSSGASASA TMASVGPEET 180 LLTPSPYPFS LASFRSGQEA FMDGYEESTN * |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influences vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). {ECO:0000269|PubMed:16740146}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.04G009300.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_014630707.1 | 1e-147 | protein SHI RELATED SEQUENCE 3 | ||||
Refseq | XP_028226972.1 | 1e-147 | protein SHI RELATED SEQUENCE 3-like | ||||
Swissprot | Q9SJT8 | 6e-42 | SRS3_ARATH; Protein SHI RELATED SEQUENCE 3 | ||||
TrEMBL | K7KHH5 | 1e-157 | K7KHH5_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA04G01125.1 | 1e-158 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF9969 | 25 | 41 | Representative plant | OGRP1313 | 15 | 49 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G21400.1 | 7e-44 | SHI-related sequence3 |
Link Out ? help Back to Top | |
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Phytozome | Glyma.04G009300.1.p |