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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
Back to Top |
| TF ID |
Glyma.04G009200.1.p |
| Common Name | GLYMA_04G009200, LOC100800981 |
| Organism |
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| Taxonomic ID |
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| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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| Family |
DBB |
| Protein Properties |
Length: 320aa MW: 36520.7 Da PI: 7.7059 |
| Description |
DBB family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Glyma.04G009200.1.p | genome | JGI | View CDS |
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| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | zf-B_box | 23.8 | 9.4e-08 | 4 | 42 | 5 | 37 |
zf-B_box 5 kCpeHeekelqlfCedCqqllCedClleeHkg......H 37
C+ +++ e++ fC ++ lC++C ++H+ H
Glyma.04G009200.1.p 4 QCAVCDKVEASVFCSADEAALCHSCDRTIHHAnklatkH 42
7******99********************7443555555 PP
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| 2 | zf-B_box | 29.2 | 1.9e-09 | 56 | 92 | 4 | 38 |
zf-B_box 4 rkCpeHeekelqlfCedCqqllCedClleeHkg..Ht 38
+ C+ ++e ++ lfC++++ llC++C + +H+ Ht
Glyma.04G009200.1.p 56 PLCDICQERRAYLFCQEDRALLCRECDVPIHRAneHT 92
68*****************************768865 PP
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| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0010200 | Biological Process | response to chitin |
| GO:0080167 | Biological Process | response to karrikin |
| GO:1900458 | Biological Process | negative regulation of brassinosteroid mediated signaling pathway |
| GO:2000306 | Biological Process | positive regulation of photomorphogenesis |
| GO:0005634 | Cellular Component | nucleus |
| GO:0016021 | Cellular Component | integral component of membrane |
| GO:0000989 | Molecular Function | transcription factor activity, transcription factor binding |
| GO:0008270 | Molecular Function | zinc ion binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 320 aa
Download sequence Send
to blast |
MKIQCAVCDK VEASVFCSAD EAALCHSCDR TIHHANKLAT KHPRFSLHYP TSQDFPLCDI 60
CQERRAYLFC QEDRALLCRE CDVPIHRANE HTQKHNRFLL TGVKLSGTSL DPAASSTNCT 120
HGSEGRNNAR SRMNRPRSSV SNEENASNSS CKVEDNVASD TGSVSTSSIS EYLIETIPGY 180
CFEDLLDASF APNGFCKNQN YDRHRRFRTK IFKLLGRVWF ELRRFQNLNA IDDQLFVKIC 240
WKISSFVFVI CISFWAPCCI LYDFFFILYS RPLFRPLILV FFSIFIGLIN NIFWGGVHAF 300
IDMNMNSLNN ATEYYVPLS*
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| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Acts as positive regulator of seedling photomorphogenesis. Plays a negative role in brassinosteroid responses. {ECO:0000269|PubMed:22535582}. |
| UniProt | Transcription activator that acts as positive regulator of seedling photomorphogenesis (PubMed:17965270). Acts downstream of COP1 and play an important role in early and long-term adjustment of the shade avoidance syndrome (SAS) responses in natural environments (PubMed:21070414). {ECO:0000269|PubMed:17965270, ECO:0000269|PubMed:21070414}. |
| Publications
? help Back to Top |
- Xu D, et al.
BBX21, an Arabidopsis B-box protein, directly activates HY5 and is targeted by COP1 for 26S proteasome-mediated degradation.
Proc. Natl. Acad. Sci. U.S.A., 2016. 113(27): p. 7655-60
[PMID:27325768] - Wei CQ, et al.
The Arabidopsis B-box protein BZS1/BBX20 interacts with HY5 and mediates strigolactone regulation of photomorphogenesis.
J Genet Genomics, 2016. 43(9): p. 555-563
[PMID:27523280] - Thussagunpanit J, et al.
Involvement of STH7 in light-adapted development in Arabidopsis thaliana promoted by both strigolactone and karrikin.
Biosci. Biotechnol. Biochem., 2017. 81(2): p. 292-301
[PMID:27858514] - Xu DB, et al.
The G-Protein β Subunit AGB1 Promotes Hypocotyl Elongation through Inhibiting Transcription Activation Function of BBX21 in Arabidopsis.
Mol Plant, 2017. 10(9): p. 1206-1223
[PMID:28827171] - Xu D,Jiang Y,Li J,Holm M,Deng XW
The B-Box Domain Protein BBX21 Promotes Photomorphogenesis.
Plant Physiol., 2018. 176(3): p. 2365-2375
[PMID:29259103] - Job N,Yadukrishnan P,Bursch K,Datta S,Johansson H
Two B-Box Proteins Regulate Photomorphogenesis by Oppositely Modulating HY5 through their Diverse C-Terminal Domains.
Plant Physiol., 2018. 176(4): p. 2963-2976
[PMID:29439209] - Crocco CD,Ocampo GG,Ploschuk EL,Mantese A,Botto JF
Heterologous Expression of AtBBX21 Enhances the Rate of Photosynthesis and Alleviates Photoinhibition in Solanumtuberosum.
Plant Physiol., 2018. 177(1): p. 369-380
[PMID:29555784] - Kang X, et al.
HRB2 and BBX21 interaction modulates Arabidopsis ABI5 locus and stomatal aperture.
Plant Cell Environ., 2018. 41(8): p. 1912-1925
[PMID:29748960]
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