![]() |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Glyma.04G004700.1.p | ||||||||
Common Name | GLYMA_04G004700, LOC102661885 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
|
||||||||
Family | MYB_related | ||||||||
Protein Properties | Length: 718aa MW: 80805.7 Da PI: 6.0855 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 37.9 | 4.2e-12 | 659 | 709 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.......TTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmg.......kgRtlkqcksrwqky 47 +WT+eE+e+++++v+++G++ Wk+I + k+Rt+ ++k++w++ Glyma.04G004700.1.p 659 PWTAEEEEKIKEGVQKFGKE-WKKILQFGShvfdkvgKRRTPHDLKDKWRNM 709 8*******************.*****98778999999*************95 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57903 | 7.75E-10 | 389 | 443 | IPR011011 | Zinc finger, FYVE/PHD-type |
Gene3D | G3DSA:3.30.40.10 | 8.5E-10 | 390 | 443 | IPR013083 | Zinc finger, RING/FYVE/PHD-type |
PROSITE profile | PS50016 | 8.644 | 393 | 442 | IPR019787 | Zinc finger, PHD-finger |
SMART | SM00249 | 8.2E-6 | 395 | 440 | IPR001965 | Zinc finger, PHD-type |
PROSITE profile | PS51294 | 12.764 | 652 | 714 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 7.18E-12 | 654 | 711 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.3E-8 | 656 | 712 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.1E-13 | 656 | 711 | IPR009057 | Homeodomain-like |
CDD | cd11660 | 3.38E-15 | 658 | 711 | No hit | No description |
Pfam | PF00249 | 4.4E-9 | 659 | 708 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0031627 | Biological Process | telomeric loop formation | ||||
GO:0000783 | Cellular Component | nuclear telomere cap complex | ||||
GO:0003691 | Molecular Function | double-stranded telomeric DNA binding | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 718 aa Download sequence Send to blast |
MDRDDDPSAL AWLWVIEALL TSKEITTPTL QGFIDAAPVG HHRFSKNTKE LVALRCLEKL 60 STLVVDPEAS SNLDSRFGFN VLGSCQDVLK EILGKIPLSN LKVAGAELLK WDICPFIKHK 120 RAVTFKCHLE QLRESIFKNT HPDTDYLKET TRLFPQNSSR VCSKRSRVCS ADETDLPSKR 180 SWACSADETD HARNGYGVEI SGDIVSQGEK INLETKKQAE QNLSLKCNEE DRLLICDANV 240 VQPVVPEYVM TTTIIPHHTS VAEPCNNTSM DETDNTAHHA IPTNDANAEN NQHIINFHQP 300 KQTEPDITSL NLSQKPVASD KTVFDMVNGC RAELSSDSDG YHNGKNDLEA KKHEFLCSPC 360 TVDQDFSAMT ESIEQNLRTV DQVFSSMTES IEQNLCMKCH EGGQLLACKT TTCPLMVHKN 420 CLGASAQLDA KGNFFCPFCA YSHAISEYLE SKENASLARK ELAIFISKGK LIQAAEFVHE 480 FHRQEHCFSR KNSKCEHIHV KNNEDDQLAG CEDNREDHVG EHANEANDLQ FERSKQQAEV 540 LREEEIGKMP TVGRVEESEV PTDHVDGHVG DKFASEKTNI APESNAEEVP QEMTKQHNID 600 GTIEPVCAQD TGKEKISEDE SEKHSNPLYS LRFRKHETQC KPQAGQVFLG NQLRRKKIPW 660 TAEEEEKIKE GVQKFGKEWK KILQFGSHVF DKVGKRRTPH DLKDKWRNMC KAHSKSK* |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Glyma.04G004700.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_006577901.1 | 0.0 | uncharacterized protein LOC102661885 isoform X1 | ||||
Refseq | XP_028227245.1 | 0.0 | uncharacterized protein LOC114408405 isoform X1 | ||||
TrEMBL | A0A445KTR8 | 0.0 | A0A445KTR8_GLYSO; Uncharacterized protein | ||||
TrEMBL | K7KHF0 | 0.0 | K7KHF0_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA04G00630.2 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3872 | 22 | 24 |
Representative plant | OGRP1443 | 7 | 13 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G58340.2 | 2e-08 | MYB_related family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | Glyma.04G004700.1.p |
Entrez Gene | 102661885 |