PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

ERF

Protein Properties

Length: 346aa MW: 38103.1 Da PI: 4.7758

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Glyma.03G263700.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	61.1	2.5e-19	99	148	2	55
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +y+G+r+++ +g+W+AeIrdp++ r++lg+f taeeAa+a++a +++++g Glyma.03G263700.1.p 99 QYRGIRQRP-WGKWAAEIRDPRK---GVRVWLGTFNTAEEAARAYDAEARRIRG 148 69*****.******954...4**********************998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00380	1.5E-37	99	162	IPR001471	AP2/ERF domain
Gene3D	G3DSA:3.30.730.10	2.2E-32	99	157	IPR001471	AP2/ERF domain
PROSITE profile	PS51032	24.092	99	156	IPR001471	AP2/ERF domain
CDD	cd00018	1.51E-32	99	158	No hit	No description
SuperFamily	SSF54171	6.28E-22	99	156	IPR016177	DNA-binding domain
Pfam	PF00847	7.4E-12	100	148	IPR001471	AP2/ERF domain
PRINTS	PR00367	9.6E-12	100	111	IPR001471	AP2/ERF domain
PRINTS	PR00367	9.6E-12	122	138	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0070483	Biological Process	detection of hypoxia
GO:0005634	Cellular Component	nucleus
GO:0005886	Cellular Component	plasma membrane
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 346 aa Download sequence Send to blast
MCGGAIISDF IPAAAIAGSR RLTADYLWPD LKKRKSDLDV DFEADFRDFK DDSDIDDDDD 60 DHQVKPFAFA ASSRLSTAAK SVAFQGRAEI SANRKRKNQY RGIRQRPWGK WAAEIRDPRK 120 GVRVWLGTFN TAEEAARAYD AEARRIRGKK AKVNFPEAPG TSSVKRSKVN PQENLKTVQP 180 NLGHKFSAGN NHMDLVEQKP LVSQYANMAS FPGSGNGLRS LPSSDDATLY FSSDQGSNSF 240 DYAPEISSML SAPLDCESHF VQNANQQQPN SQNVVSIEDD SAKTLSEELV DIESELKFFQ 300 MPYLEGSWGD TSLESLLSGD TTQDGGNLMN LWCFDDIPSM AGGVF*

Sequence ? help Back to Top

Protein Sequence Length: 346 aa Download sequence Send to blast

MCGGAIISDF IPAAAIAGSR RLTADYLWPD LKKRKSDLDV DFEADFRDFK DDSDIDDDDD  60
DHQVKPFAFA ASSRLSTAAK SVAFQGRAEI SANRKRKNQY RGIRQRPWGK WAAEIRDPRK  120
GVRVWLGTFN TAEEAARAYD AEARRIRGKK AKVNFPEAPG TSSVKRSKVN PQENLKTVQP  180
NLGHKFSAGN NHMDLVEQKP LVSQYANMAS FPGSGNGLRS LPSSDDATLY FSSDQGSNSF  240
DYAPEISSML SAPLDCESHF VQNANQQQPN SQNVVSIEDD SAKTLSEELV DIESELKFFQ  300
MPYLEGSWGD TSLESLLSGD TTQDGGNLMN LWCFDDIPSM AGGVF*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2gcc_A	2e-20	99	156	5	63	ATERF1
3gcc_A	2e-20	99	156	5	63	ATERF1
Search in ModeBase

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Gma.31063	0.0	cotyledon\| epicotyl\| flower\| hypocotyl\| leaf\| meristem\| pod\| root\| stem

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00204	DAP	Transfer from AT1G53910	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Glyma.03G263700.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KT031075	0.0	KT031075.1 Glycine max clone HN_CCL_34 AP2-EREBP transcription factor (Glyma03g42450.1) mRNA, partial cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_001238300.2	0.0	EREBP/AP2 transcription factor
TrEMBL	A0A0K2CT15	0.0	A0A0K2CT15_SOYBN; AP2-EREBP transcription factor (Fragment)
STRING	GLYMA03G42450.1	0.0	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4808	32	52
Representative plant	OGRP6	16	1718

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G53910.3	2e-57	related to AP2 12

Link Out ? help Back to Top
Phytozome	Glyma.03G263700.1.p

Publications ? help Back to Top
Chai C, et al. Soybean transcription factor ORFeome associated with drought resistance: a valuable resource to accelerate research on abiotic stress resistance. BMC Genomics, 2015. 16: p. 596 [PMID:26268547]