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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
Back to Top |
| TF ID |
Glyma.03G262200.4.p |
| Common Name | GLYMA_03G262200, LOC100781489 |
| Organism |
|
| Taxonomic ID |
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| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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| Family |
B3 |
| Protein Properties |
Length: 371aa MW: 41400 Da PI: 8.8834 |
| Description |
B3 family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Glyma.03G262200.4.p | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | B3 | 98.2 | 5.2e-31 | 38 | 141 | 1 | 98 |
EEEE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-. CS
B3 1 ffkvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld. 85
f+kv tpsdv+k++rlv+pk++ae++ ++ +e++ l +ed++g++W+++++y+++s++yv+tkGW++Fvk+++L++gD+v F++
Glyma.03G262200.4.p 38 FEKVATPSDVGKLNRLVIPKQHAEKYfpldSSTNEKGLLLNFEDRNGKVWRFRYSYWNSSQSYVMTKGWSRFVKEKKLDAGDIVSFQRGl 127
89***************************966778999*************************************************655 PP
SS.SEE..EEEEE- CS
B3 86 gr.sefelvvkvfr 98
g+ + +l++ + r
Glyma.03G262200.4.p 128 GDlYRHRLYIDWKR 141
66666666666655 PP
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| Sequence ? help Back to Top |
| Protein Sequence Length: 371 aa
Download sequence Send
to blast |
MDLSLGSSKE EEEEGNLQQG GGGVVHHAHQ VVEKEHMFEK VATPSDVGKL NRLVIPKQHA 60
EKYFPLDSST NEKGLLLNFE DRNGKVWRFR YSYWNSSQSY VMTKGWSRFV KEKKLDAGDI 120
VSFQRGLGDL YRHRLYIDWK RRPDHAHAHP PHHHDPLFLP SIRLYSLPPT MPPRYHHDHH 180
FHHHLNYNNL FTFQQHQYQQ LGAATTTHHN NYGYQNSGSG SLYYLRSSMS MGGGDQNLQG 240
RGSNIVPMII DSVPVNVAHH NNNRHGNGGI TSGGTNCSGK RLRLFGVNME CASSAEDSKE 300
LSSGSAAHVT TAASSSSLHH QRLRVPVPVP LEDPLSSSAA AAARFGDHKG ASTGTSLLFD 360
LDPSLQYHRH *
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| 3D Structure ? help Back to Top |
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| PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
| 5os9_A | 3e-63 | 31 | 143 | 1 | 114 | B3 domain-containing transcription factor NGA1 |
| 5os9_B | 3e-63 | 31 | 143 | 1 | 114 | B3 domain-containing transcription factor NGA1 |
| Search in ModeBase |
| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Regulates lateral organ growth. Functionally redundant with NGA2, NGA3 and NGA4. {ECO:0000269|PubMed:16603651}. |
| Annotation --
Nucleotide ? help
Back to Top |
| Source |
Hit ID |
E-value |
Description |
| GenBank | AP015035 | 1e-147 | AP015035.1 Vigna angularis var. angularis DNA, chromosome 2, almost complete sequence, cultivar: Shumari. |
| Publications
? help Back to Top |
- Ding Y, et al.
Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
BMC Plant Biol., 2013. 13: p. 229
[PMID:24377444] - Lee BH, et al.
The Arabidopsis thaliana NGATHA transcription factors negatively regulate cell proliferation of lateral organs.
Plant Mol. Biol., 2015. 89(4-5): p. 529-38
[PMID:26433582] - Lozano-Sotomayor P, et al.
Altered expression of the bZIP transcription factor DRINK ME affects growth and reproductive development in Arabidopsis thaliana.
Plant J., 2016. 88(3): p. 437-451
[PMID:27402171] - Alvarez JP,Furumizu C,Efroni I,Eshed Y,Bowman JL
Active suppression of a leaf meristem orchestrates determinate leaf growth.
Elife, 2017.
[PMID:27710768] - Sasnauskas G,Manakova E,Lapėnas K,Kauneckaitė K,Siksnys V
DNA recognition by Arabidopsis transcription factors ABI3 and NGA1.
FEBS J., 2018. 285(21): p. 4041-4059
[PMID:30183137] - Sato H, et al.
Arabidopsis thaliana NGATHA1 transcription factor induces ABA biosynthesis by activating NCED3 gene during dehydration stress.
Proc. Natl. Acad. Sci. U.S.A., 2018. 115(47): p. E11178-E11187
[PMID:30397148]
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