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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Glyma.03G262200.1.p |
Common Name | GLYMA_03G262200, LOC100781489 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family |
B3 |
Protein Properties |
Length: 421aa MW: 47128.1 Da PI: 7.3227 |
Description |
B3 family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Glyma.03G262200.1.p | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | B3 | 97.9 | 6.6e-31 | 88 | 191 | 1 | 98 |
EEEE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-. CS
B3 1 ffkvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld. 85
f+kv tpsdv+k++rlv+pk++ae++ ++ +e++ l +ed++g++W+++++y+++s++yv+tkGW++Fvk+++L++gD+v F++
Glyma.03G262200.1.p 88 FEKVATPSDVGKLNRLVIPKQHAEKYfpldSSTNEKGLLLNFEDRNGKVWRFRYSYWNSSQSYVMTKGWSRFVKEKKLDAGDIVSFQRGl 177
89***************************966778999*************************************************655 PP
SS.SEE..EEEEE- CS
B3 86 gr.sefelvvkvfr 98
g+ + +l++ + r
Glyma.03G262200.1.p 178 GDlYRHRLYIDWKR 191
66666666666655 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 421 aa
Download sequence Send
to blast |
MELMQQVKGN YSDSREEEEE EEAAAITRES ESSRLHQQDT ASNFGKKLDL MDLSLGSSKE 60 EEEEGNLQQG GGGVVHHAHQ VVEKEHMFEK VATPSDVGKL NRLVIPKQHA EKYFPLDSST 120 NEKGLLLNFE DRNGKVWRFR YSYWNSSQSY VMTKGWSRFV KEKKLDAGDI VSFQRGLGDL 180 YRHRLYIDWK RRPDHAHAHP PHHHDPLFLP SIRLYSLPPT MPPRYHHDHH FHHHLNYNNL 240 FTFQQHQYQQ LGAATTTHHN NYGYQNSGSG SLYYLRSSMS MGGGDQNLQG RGSNIVPMII 300 DSVPVNVAHH NNNRHGNGGI TSGGTNCSGK RLRLFGVNME CASSAEDSKE LSSGSAAHVT 360 TAASSSSLHH QRLRVPVPVP LEDPLSSSAA AAARFGDHKG ASTGTSLLFD LDPSLQYHRH 420 *
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3D Structure ? help Back to Top |
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PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
5os9_A | 4e-63 | 81 | 193 | 1 | 114 | B3 domain-containing transcription factor NGA1 |
5os9_B | 4e-63 | 81 | 193 | 1 | 114 | B3 domain-containing transcription factor NGA1 |
Search in ModeBase |
Functional Description ? help
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Source |
Description |
UniProt | Regulates lateral organ growth. Functionally redundant with NGA2, NGA3 and NGA4. {ECO:0000269|PubMed:16603651}. |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | AP015035 | 1e-147 | AP015035.1 Vigna angularis var. angularis DNA, chromosome 2, almost complete sequence, cultivar: Shumari. |
Publications
? help Back to Top |
- Ding Y, et al.
Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] - Lee BH, et al.
The Arabidopsis thaliana NGATHA transcription factors negatively regulate cell proliferation of lateral organs. Plant Mol. Biol., 2015. 89(4-5): p. 529-38 [PMID:26433582] - Lozano-Sotomayor P, et al.
Altered expression of the bZIP transcription factor DRINK ME affects growth and reproductive development in Arabidopsis thaliana. Plant J., 2016. 88(3): p. 437-451 [PMID:27402171] - Alvarez JP,Furumizu C,Efroni I,Eshed Y,Bowman JL
Active suppression of a leaf meristem orchestrates determinate leaf growth. Elife, 2017. [PMID:27710768] - Sasnauskas G,Manakova E,Lapėnas K,Kauneckaitė K,Siksnys V
DNA recognition by Arabidopsis transcription factors ABI3 and NGA1. FEBS J., 2018. 285(21): p. 4041-4059 [PMID:30183137] - Sato H, et al.
Arabidopsis thaliana NGATHA1 transcription factor induces ABA biosynthesis by activating NCED3 gene during dehydration stress. Proc. Natl. Acad. Sci. U.S.A., 2018. 115(47): p. E11178-E11187 [PMID:30397148]
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