PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Glyma.03G258800.3.p

Common Name

GLYMA_03G258800, LOC100775598

Organism

Glycine max

Taxonomic ID

3847

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

Dof

Protein Properties

Length: 258aa MW: 28391.5 Da PI: 8.5631

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Glyma.03G258800.3.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	125	2.5e-39	20	80	2	62
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 ++++l+cprC stntkfCyynnysl+qPryfCk+CrryWt+GG+lrnvPvGgg+rknk+++ Glyma.03G258800.3.p 20 PQEQLNCPRCSSTNTKFCYYNNYSLTQPRYFCKTCRRYWTEGGSLRNVPVGGGSRKNKRVT 80 6899******************************************************976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	4.0E-27	15	78	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	2.1E-33	22	78	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.031	24	78	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	26	62	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 258 aa Download sequence Send to blast
MEDIGPNSCT RPVTEKKARP QEQLNCPRCS STNTKFCYYN NYSLTQPRYF CKTCRRYWTE 60 GGSLRNVPVG GGSRKNKRVT SSKVPDLNPP ISLSSVSAIS SQNPKMQGVH DLNLAFPAAM 120 DKYHHGTSPY VEMPKLEIGG DHSTSHHSHH HSHSPSSAVE LLRSGMDSRG LNPYAPNSLM 180 SGSDHSLYTP GYPMQEIKPN LSFSVDDGFG NRSYGVQENG GGRLLFPFGD IKHLSAGLEV 240 EHNKEQGNNS TGYWTGW*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Gma.22687	0.0	hypocotyl\| leaf\| meristem\| root\| stem

Expression -- Description ? help Back to Top
Source	Description
Uniprot	DEVELOPMENTAL STAGE: Turned off in siliques when they reached full maturation. Not expressed in developing or mature embryos.
Uniprot	TISSUE SPECIFICITY: Expressed in the vascular system of the mother plant, but not present in the seed and embryo. In maturing siliques, found all through the funiculus connecting the placenta to the ovule, but not in the ovule.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor specifically involved in the maternal control of seed germination. Regulates transcription by binding to a 5'-AA[AG]G-3' consensus core sequence. May ensure the activation of a component that would trigger germination as a consequence of red light perception.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Glyma.03G258800.3.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	DQ857268	0.0	DQ857268.1 Glycine max Dof18 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003520878.1	0.0	dof zinc finger protein DOF2.5 isoform X1
Refseq	XP_006577350.1	0.0	dof zinc finger protein DOF2.5 isoform X2
Refseq	XP_006577351.1	0.0	dof zinc finger protein DOF2.5 isoform X2
Refseq	XP_028226874.1	0.0	dof zinc finger protein DOF2.5-like isoform X1
Refseq	XP_028226875.1	0.0	dof zinc finger protein DOF2.5-like isoform X2
Refseq	XP_028226876.1	0.0	dof zinc finger protein DOF2.5-like isoform X2
Swissprot	Q9ZPY0	3e-58	DOF25_ARATH; Dof zinc finger protein DOF2.5
TrEMBL	A0A0B2Q4C4	0.0	A0A0B2Q4C4_GLYSO; Dof zinc finger protein DOF2.5
TrEMBL	I1JS12	0.0	I1JS12_SOYBN; Uncharacterized protein
TrEMBL	K7KH42	0.0	K7KH42_SOYBN; Uncharacterized protein
STRING	GLYMA03G41980.3	0.0	(Glycine max)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G61850.4	5e-66	Dof family protein

Link Out ? help Back to Top
Phytozome	Glyma.03G258800.3.p
Entrez Gene	100775598

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]