PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.03G258800.3.p | ||||||||
Common Name | GLYMA_03G258800, LOC100775598 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | Dof | ||||||||
Protein Properties | Length: 258aa MW: 28391.5 Da PI: 8.5631 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 125 | 2.5e-39 | 20 | 80 | 2 | 62 |
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 ++++l+cprC stntkfCyynnysl+qPryfCk+CrryWt+GG+lrnvPvGgg+rknk+++ Glyma.03G258800.3.p 20 PQEQLNCPRCSSTNTKFCYYNNYSLTQPRYFCKTCRRYWTEGGSLRNVPVGGGSRKNKRVT 80 6899******************************************************976 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD007478 | 4.0E-27 | 15 | 78 | IPR003851 | Zinc finger, Dof-type |
Pfam | PF02701 | 2.1E-33 | 22 | 78 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 29.031 | 24 | 78 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 26 | 62 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 258 aa Download sequence Send to blast |
MEDIGPNSCT RPVTEKKARP QEQLNCPRCS STNTKFCYYN NYSLTQPRYF CKTCRRYWTE 60 GGSLRNVPVG GGSRKNKRVT SSKVPDLNPP ISLSSVSAIS SQNPKMQGVH DLNLAFPAAM 120 DKYHHGTSPY VEMPKLEIGG DHSTSHHSHH HSHSPSSAVE LLRSGMDSRG LNPYAPNSLM 180 SGSDHSLYTP GYPMQEIKPN LSFSVDDGFG NRSYGVQENG GGRLLFPFGD IKHLSAGLEV 240 EHNKEQGNNS TGYWTGW* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Gma.22687 | 0.0 | hypocotyl| leaf| meristem| root| stem |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: Turned off in siliques when they reached full maturation. Not expressed in developing or mature embryos. | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in the vascular system of the mother plant, but not present in the seed and embryo. In maturing siliques, found all through the funiculus connecting the placenta to the ovule, but not in the ovule. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor specifically involved in the maternal control of seed germination. Regulates transcription by binding to a 5'-AA[AG]G-3' consensus core sequence. May ensure the activation of a component that would trigger germination as a consequence of red light perception. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.03G258800.3.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | DQ857268 | 0.0 | DQ857268.1 Glycine max Dof18 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003520878.1 | 0.0 | dof zinc finger protein DOF2.5 isoform X1 | ||||
Refseq | XP_006577350.1 | 0.0 | dof zinc finger protein DOF2.5 isoform X2 | ||||
Refseq | XP_006577351.1 | 0.0 | dof zinc finger protein DOF2.5 isoform X2 | ||||
Refseq | XP_028226874.1 | 0.0 | dof zinc finger protein DOF2.5-like isoform X1 | ||||
Refseq | XP_028226875.1 | 0.0 | dof zinc finger protein DOF2.5-like isoform X2 | ||||
Refseq | XP_028226876.1 | 0.0 | dof zinc finger protein DOF2.5-like isoform X2 | ||||
Swissprot | Q9ZPY0 | 3e-58 | DOF25_ARATH; Dof zinc finger protein DOF2.5 | ||||
TrEMBL | A0A0B2Q4C4 | 0.0 | A0A0B2Q4C4_GLYSO; Dof zinc finger protein DOF2.5 | ||||
TrEMBL | I1JS12 | 0.0 | I1JS12_SOYBN; Uncharacterized protein | ||||
TrEMBL | K7KH42 | 0.0 | K7KH42_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA03G41980.3 | 0.0 | (Glycine max) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G61850.4 | 5e-66 | Dof family protein |
Link Out ? help Back to Top | |
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Phytozome | Glyma.03G258800.3.p |
Entrez Gene | 100775598 |
Publications ? help Back to Top | |||
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