PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Glyma.03G258700.2.p | ||||||||
Common Name | GLYMA_03G258700 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
|
||||||||
Family | MYB_related | ||||||||
Protein Properties | Length: 223aa MW: 25114 Da PI: 5.4186 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 54.6 | 2.5e-17 | 10 | 55 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+ T+eEd+l+++ + +lG++ W++Ia +++ gRt++++k++w+++l Glyma.03G258700.2.p 10 RGNITPEEDDLIIRMHSLLGNR-WSLIAGRLP-GRTDNEIKNYWNTHL 55 7999******************.*********.************996 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 2.7E-26 | 1 | 59 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.15E-16 | 1 | 65 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 27.357 | 5 | 59 | IPR017930 | Myb domain |
SMART | SM00717 | 7.9E-17 | 9 | 57 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.1E-15 | 10 | 55 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.76E-13 | 14 | 55 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 223 aa Download sequence Send to blast |
MNYLRPDIKR GNITPEEDDL IIRMHSLLGN RWSLIAGRLP GRTDNEIKNY WNTHLSKKLR 60 NQGTDPNTHD KLTEAPEKKK GRKKNKQKST ENNKGSEKTL VYLPKPIRVK ALSSCIPRTD 120 STLTLDSNSA TTASTSQEKV QSPEAETKEV NMVWGVSDNI GDNGGIGIFF GEDHDLVNSA 180 SYMECYSDDH DTLEKLYEEY LQLLNVEEKP DELDSFAQSL LV* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 1e-14 | 2 | 59 | 51 | 108 | B-MYB |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
---|---|---|---|---|---|---|
UniGene ID | E-value | Expressed in | ||||
Gma.23808 | 0.0 | leaf |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Glyma.03G258700.2.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AB029261 | 2e-61 | AB029261.1 Glycine max gene for GmMYB4, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_028226877.1 | 1e-163 | transcription factor MYB8-like | ||||
TrEMBL | K7KH41 | 1e-163 | K7KH41_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA03G41965.1 | 1e-163 | (Glycine max) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G22640.1 | 1e-37 | myb domain protein 3 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Glyma.03G258700.2.p |