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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.03G258200.1.p | ||||||||
Common Name | GLYMA_03G258200, LOC100819971 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | ERF | ||||||||
Protein Properties | Length: 185aa MW: 20189.6 Da PI: 4.9002 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 56.1 | 9.5e-18 | 27 | 75 | 3 | 55 |
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 y+GVr ++ +g+Wv+eIr+p++ + r++lg+f +e+Aa+a++ a+ +l+g Glyma.03G258200.1.p 27 YRGVRKRR-WGKWVSEIREPRK---KNRIWLGSFPVPEMAARAYDVAAYCLKG 75 9****887.**********854...59************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00380 | 3.1E-35 | 26 | 89 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.63E-21 | 26 | 85 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 23.881 | 26 | 83 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 2.9E-31 | 26 | 84 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.10E-29 | 27 | 85 | No hit | No description |
Pfam | PF00847 | 1.0E-11 | 27 | 75 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.3E-12 | 27 | 38 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.3E-12 | 65 | 85 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 185 aa Download sequence Send to blast |
MDHQPPPCPA AASATDNPRG GTRHPMYRGV RKRRWGKWVS EIREPRKKNR IWLGSFPVPE 60 MAARAYDVAA YCLKGRKAQL NFPDDVDSLP LPSSRTARDI QTAAAQAARM MKASGNDEKS 120 GIASDDGDSG CDDFWGEIEL PELMDGECCW GCPAGASSWT SSGDLAEWPE EELSPQQPSF 180 MACL* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 3e-18 | 21 | 87 | 9 | 76 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00120 | DAP | Transfer from AT1G01250 | Download |
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.03G258200.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003520876.1 | 1e-134 | ethylene-responsive transcription factor ERF023 | ||||
Refseq | XP_028226869.1 | 1e-134 | ethylene-responsive transcription factor ERF023-like | ||||
Swissprot | Q1ECI2 | 3e-53 | ERF23_ARATH; Ethylene-responsive transcription factor ERF023 | ||||
TrEMBL | A0A445LHA6 | 1e-132 | A0A445LHA6_GLYSO; Ethylene-responsive transcription factor ERF023 | ||||
TrEMBL | I1JS07 | 1e-132 | I1JS07_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA03G41910.1 | 1e-133 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF6375 | 28 | 47 |
Representative plant | OGRP6 | 16 | 1718 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G01250.1 | 9e-50 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | Glyma.03G258200.1.p |
Entrez Gene | 100819971 |
Publications ? help Back to Top | |||
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