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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
Back to Top |
| TF ID |
Glyma.03G252100.1.p |
| Common Name | GLYMA_03G252100 |
| Organism |
|
| Taxonomic ID |
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| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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| Family |
Whirly |
| Protein Properties |
Length: 243aa MW: 26998.7 Da PI: 9.3461 |
| Description |
Whirly family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Glyma.03G252100.1.p | genome | JGI | View CDS |
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| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | Whirly | 185.3 | 1.1e-57 | 69 | 202 | 2 | 137 |
Whirly 2 vyktkaalkvkavrptfealdsgnlklkraGglllelanataerkydWekkqsfalsatevaelvdlaskesceffhdpaakgsneGkvr 91
vyk+kaa+++ + +ptf++ldsg+++++r+G++++ ++ +++erkydW+k+q+falsatev++l+ + +++sc+ffhdp++ +sn+G+vr
Glyma.03G252100.1.p 69 VYKGKAAFSLIPCLPTFTKLDSGTVVVDRRGSIMMSFMHSIGERKYDWDKRQKFALSATEVGSLITMDAQDSCDFFHDPSMLSSNAGQVR 158
9***************************************************************************************** PP
Whirly 92 kalkvePlpdGsGlfvnlsvtnslvkgnesfsvPvskaefavlrsl 137
k+l+++P+++ G+fv+l+v n+l++++++fsvPv+ aefav++++
Glyma.03G252100.1.p 159 KSLSIKPHAN--GYFVSLTVVNNLLNTKDYFSVPVTTAEFAVMKTA 202
********97..69******************************97 PP
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| Sequence ? help Back to Top |
| Protein Sequence Length: 243 aa
Download sequence Send
to blast |
MFTLSRVFPL TSPSRHRLLE VLSSRKVEVG DRLRQEGRDF TYSAAISTAT NNYAAKGHAS 60
DRIFAPYTVY KGKAAFSLIP CLPTFTKLDS GTVVVDRRGS IMMSFMHSIG ERKYDWDKRQ 120
KFALSATEVG SLITMDAQDS CDFFHDPSML SSNAGQVRKS LSIKPHANGY FVSLTVVNNL 180
LNTKDYFSVP VTTAEFAVMK TACTFALPHI MGWDQITNQQ SRGIDGLQAK GDSKVSELEW 240
ER*
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| 3D Structure ? help Back to Top |
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| PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
| 4kop_A | 4e-83 | 60 | 219 | 8 | 169 | Single-stranded DNA-binding protein WHY2, mitochondrial |
| 4kop_B | 4e-83 | 60 | 219 | 8 | 169 | Single-stranded DNA-binding protein WHY2, mitochondrial |
| 4kop_C | 4e-83 | 60 | 219 | 8 | 169 | Single-stranded DNA-binding protein WHY2, mitochondrial |
| 4kop_D | 4e-83 | 60 | 219 | 8 | 169 | Single-stranded DNA-binding protein WHY2, mitochondrial |
| Search in ModeBase |
| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Single-stranded DNA-binding protein that may be involved in the maintenance of mitochondrial genome stability by preventing break-induced DNA rearrangements. {ECO:0000269|PubMed:21911368}. |
