PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.03G250000.2.p
Common NameGLYMA_03G250000, LOC100803267
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family G2-like
Protein Properties Length: 410aa    MW: 45817.1 Da    PI: 5.0693
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.03G250000.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like105.43.2e-33204258155
              G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                          k+r+rWtpeLHe+Fveav++LGGsekAtPk +l+ mkv+gLt++hvkSHLQkYR+
  Glyma.03G250000.2.p 204 KARMRWTPELHEAFVEAVNHLGGSEKATPKGVLNQMKVEGLTIYHVKSHLQKYRT 258
                          68****************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129412.661201261IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.2E-30202260IPR009057Homeodomain-like
SuperFamilySSF466895.38E-17202258IPR009057Homeodomain-like
TIGRFAMsTIGR015574.2E-25204258IPR006447Myb domain, plants
PfamPF002491.7E-9206257IPR001005SANT/Myb domain
PfamPF143795.8E-21291335IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 410 aa     Download sequence    Send to blast
MSTSSRVLPT PLENKYMKPP DSFQLSPVRD LTANSASSNS IRSAGKMFSS PSKCPDDFPF  60
SSVSQHDRQY QDPPFVSQTI GDSVSSEIHS MTFISHPQEN EDLSWGPDPC QDILGFPENV  120
SVQHDQVENN GCYINDDNVK RSDFGEWVDQ LMSIDDSLHP SWSQLLADDN VAEPKPKASQ  180
VPPQQHIPSG EVVGNSASTA SQTKARMRWT PELHEAFVEA VNHLGGSEKA TPKGVLNQMK  240
VEGLTIYHVK SHLQKYRTAR YKPEPSEGTS EKKVTPMEEM KSLDLKTSKG ITEALRLQME  300
LQKRLHEQLE IQRKLQIQIE DQGKRLQMMF EKQREMGDSK VNVSLDEPSA AAPSETVETT  360
NEERHKFESI PKAIPEEKES STTKQIAGEA EEMIKEDEVA PPTKRVKSS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A9e-31204262260Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B9e-31204262260Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A9e-31204262260Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C9e-31204262260Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D9e-31204262260Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F9e-31204262260Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H9e-31204262260Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J9e-31204262260Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.50710.0cotyledon| root
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in shoots and roots. {ECO:0000269|PubMed:20838596}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor acting as central integrator of phosphate starvation responses (PubMed:20838596). Regulates FER1 expression upon phosphate starvation, linking iron and phosphate homeostasis (PubMed:23788639). {ECO:0000269|PubMed:20838596, ECO:0000269|PubMed:23788639}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00532DAPTransfer from AT5G29000Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.03G250000.2.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Not up-regulated by Pi starvation. {ECO:0000269|PubMed:26586833}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJN2015270.0JN201527.1 Glycine max PHR2 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001350645.10.0MYB-CC domain-containing transcription factor PHR10
RefseqXP_006577307.10.0MYB-CC domain-containing transcription factor PHR10 isoform X2
RefseqXP_025983474.10.0MYB-CC domain-containing transcription factor PHR10 isoform X2
RefseqXP_028226743.10.0protein PHR1-LIKE 1-like isoform X2
RefseqXP_028226744.10.0protein PHR1-LIKE 1-like isoform X2
SwissprotQ8GUN54e-90PHL1_ARATH; Protein PHR1-LIKE 1
TrEMBLA0A445LH290.0A0A445LH29_GLYSO; Protein PHR1-LIKE 1 isoform B
TrEMBLI1JRR70.0I1JRR7_SOYBN; PHR2
STRINGGLYMA03G41040.30.0(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G29000.28e-91G2-like family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Bonnot C, et al.
    A chemical genetic strategy identify the PHOSTIN, a synthetic molecule that triggers phosphate starvation responses in Arabidopsis thaliana.
    New Phytol., 2016. 209(1): p. 161-76
    [PMID:26243630]
  4. Aleksza D,Horváth GV,Sándor G,Szabados L
    Proline Accumulation Is Regulated by Transcription Factors Associated with Phosphate Starvation.
    Plant Physiol., 2017. 175(1): p. 555-567
    [PMID:28765275]