PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Glyma.03G247100.2.p

Common Name

GLYMA_03G247100

Organism

Glycine max

Taxonomic ID

3847

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

bZIP

Protein Properties

Length: 301aa MW: 32270.1 Da PI: 9.1267

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Glyma.03G247100.2.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	50.4	5e-16	111	166	4	59
XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevakl 59 kr rr+ +NRe+ArrsR+RK+a + eLe+ v +L +eN++L k+ ++++++ Glyma.03G247100.2.p 111 AKRVRRMLSNRESARRSRRRKQAHLTELETQVSQLRSENSSLLKRFTDVSQKYSNA 166 79*****************************************9999888888765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	2.5E-19	108	172	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	11.576	110	162	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	1.9E-12	110	163	No hit	No description
Pfam	PF00170	1.7E-13	111	164	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	3.94E-12	112	163	No hit	No description
PROSITE pattern	PS00036	0	115	130	IPR004827	Basic-leucine zipper domain
Pfam	PF12498	1.1E-44	179	292	IPR020983	Basic leucine-zipper, C-terminal

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 301 aa Download sequence Send to blast
MSLLSSVMLS FEGSLVKSQN PDSGPQASNF SEVGSHATLK GSGPFGNDDP SKLQNKDIKA 60 QIGIPSSPSM QNKSAVVAMR PTISGSSGEQ SDDEEAEGEI NMTGNMTPVD AKRVRRMLSN 120 RESARRSRRR KQAHLTELET QVSQLRSENS SLLKRFTDVS QKYSNAAVDN RVLKADVETL 180 RAKVKMAEET VKRITGLSPM LHAMTEMSSL GMPLFDESPS ETSADAAVPV QEDPNHHLCQ 240 PTSNNGLGGI SSIETVQQNV AAVVGGNKMG RTTSLHRVAS LEHLQKRIRG GADSRGTPSN 300 *

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	124	131	RRSRRRKQ
2	126	131	SRRRKQ

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Gma.5483	0.0	cotyledon\| epicotyl\| flower\| hypocotyl\| leaf\| root\| seed coat

Functional Description ? help Back to Top
Source	Description
UniProt	Binds to the G-box-like motif (5'-ACGTGGC-3') of the chalcone synthase (CHS) gene promoter. G-box and G-box-like motifs are defined in promoters of certain plant genes which are regulated by such diverse stimuli as light-induction or hormone control.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Glyma.03G247100.2.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT093254	0.0	BT093254.1 Soybean clone JCVI-FLGm-24C5 unknown mRNA.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_001237113.2	0.0	bZIP transcription factor bZIP105
Refseq	XP_028226695.1	0.0	light-inducible protein CPRF2-like
Swissprot	Q99090	6e-79	CPRF2_PETCR; Light-inducible protein CPRF2
TrEMBL	A0A0R0KPC1	0.0	A0A0R0KPC1_SOYBN; Uncharacterized protein
STRING	GLYMA03G40730.1	0.0	(Glycine max)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G28770.1	4e-47	bZIP family protein

Link Out ? help Back to Top
Phytozome	Glyma.03G247100.2.p

Publications ? help Back to Top
Weisshaar B,Armstrong GA,Block A,da Costa e Silva O,Hahlbrock K Light-inducible and constitutively expressed DNA-binding proteins recognizing a plant promoter element with functional relevance in light responsiveness. EMBO J., 1991. 10(7): p. 1777-86 [PMID:2050115]