 |
Plant Transcription
Factor Database
|
Transcription Factor Information
Basic
Information? help
Back to Top |
TF ID |
Glyma.03G240000.1.p |
Common Name | GLYMA_03G240000, LOC100777413 |
Organism |
|
Taxonomic ID |
|
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
|
Family |
bHLH |
Protein Properties |
Length: 344aa MW: 38466.4 Da PI: 6.7821 |
Description |
bHLH family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Glyma.03G240000.1.p | genome | JGI | View CDS |
|
Signature Domain? help Back to Top |
 |
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | HLH | 40.9 | 3.8e-13 | 149 | 200 | 1 | 55 |
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
+r++h ++Er+RR+++N+ ++ Lr+l+P++ + ++ + a+i A++++k+L+
Glyma.03G240000.1.p 149 QRMTHIAVERNRRKQMNEYLSVLRSLMPES---YVQRGDQASIIGGAINFVKELE 200
79****************************...9******************995 PP
|
Sequence ? help Back to Top |
Protein Sequence Length: 344 aa
Download sequence Send
to blast |
MQLGIFRGTH IKIFCMCLPE GERGMALEAV VYPQPQDPFG HGIKDPSYNY NNLLEGGGGN 60 WGYADFNLEK EDRTCVPFLA NQTENYPYGE WNCSPSPPSM LPQLNIASNP QSSETSNTQN 120 NLDSSVSTPA RPKRRRTKSR KNKEEIENQR MTHIAVERNR RKQMNEYLSV LRSLMPESYV 180 QRGDQASIIG GAINFVKELE QRLQFLGAQK EKEAKSDVLF SEFFSFPQYS TSASGGCDNS 240 TAMSEQKSEA QSGIADIEVT MVESHANLKI RSKKRPKQLL KIVSSLHGMR LTILHLNVTT 300 TGEIVLYSLS VKVEEDCKLG SVDEIAAAVY QILDRIQQET ISN*
|
Nucleic Localization
Signal ? help
Back to Top |
 |
No. |
Start |
End |
Sequence |
1 | 149 | 160 | RMTHIAVERNRR |
Expression --
Description ? help
Back to Top |
Source |
Description |
Uniprot | TISSUE SPECIFICITY: Expressed constitutively in roots, leaves, stems, and flowers. {ECO:0000269|PubMed:12679534}. |
Annotation --
Nucleotide ? help
Back to Top |
Source |
Hit ID |
E-value |
Description |
GenBank | AP015038 | 1e-149 | AP015038.1 Vigna angularis var. angularis DNA, chromosome 5, almost complete sequence, cultivar: Shumari. |