PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.03G236600.1.p
Common NameGLYMA_03G236600, LOC100776872
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family C2H2
Protein Properties Length: 513aa    MW: 55375.9 Da    PI: 8.4855
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.03G236600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.21.5e-0597119123
                          EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                          ++C++C+k F r  nL+ H r H
  Glyma.03G236600.1.p  97 FVCEICNKGFQRDQNLQLHRRGH 119
                          89*******************88 PP
2zf-C2H211.80.00072173195123
                          EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                          +kC++C+k +  +s+ k H + +
  Glyma.03G236600.1.p 173 WKCEKCSKKYAVQSDWKAHSKIC 195
                          58*****************9876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576674.08E-796119No hitNo description
Gene3DG3DSA:3.30.160.601.7E-596119IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.01797119IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.94997119IPR007087Zinc finger, C2H2
PfamPF121718.2E-597119IPR022755Zinc finger, double-stranded RNA binding
PROSITE patternPS00028099119IPR007087Zinc finger, C2H2
SMARTSM0035596138168IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.601.6E-4161194IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576674.08E-7168193No hitNo description
SMARTSM00355140173193IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 513 aa     Download sequence    Send to blast
MSNSNITSCD SWRFSTENNI NSGEDAAVAV KQQLEMLGQL HSPNSNTSTT TNNSNGSASN  60
TDSQPPAKKK RNLPGNPDPS AEVIALSPNT LVATNRFVCE ICNKGFQRDQ NLQLHRRGHN  120
LPWKLKLRTT TDVRKRVYVC PEPSCVHHNP ARALGDLTGI KKHFSRKHGE KKWKCEKCSK  180
KYAVQSDWKA HSKICGTKEY KCDCGTIFSR RDSFITHRAF CDALSEENNK FNEGQLPKMH  240
GSNLQPPTII PNLVASLPIN GANNHKHPLS LPHDLMTTIP AKPFNNNMAA AFTRSLSSTS  300
QLSSKSPNIN MFEENGLLSP HMSATALLQK AAEMGATVNS NSNNNSMMMS GEKSFINVTS  360
MAPPSYGIMN PNMHNGQQDL SQYNFIANGV VDGGSNGMGM SGLDMFNAIL DQSKALSKII  420
EQNNRSSTYN GVLHAMNNGR SSGSIEVGGT KESEDVMTLD LLGIGGGGGG GGDGNFYGGD  480
QQLEMVGGDG IWGNWSNKNA GLESFSATNS TI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C2e-33169232366Zinc finger protein JACKDAW
5b3h_F2e-33169232366Zinc finger protein JACKDAW
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.256910.0flower| hypocotyl| leaf| pod| stem
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.03G236600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150381e-113AP015038.1 Vigna angularis var. angularis DNA, chromosome 5, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003520805.10.0protein indeterminate-domain 2
RefseqXP_028226567.10.0zinc finger protein GAI-ASSOCIATED FACTOR 1-like
TrEMBLA0A445LG800.0A0A445LG80_GLYSO; Protein indeterminate-domain 2
TrEMBLI1JRB50.0I1JRB5_SOYBN; Uncharacterized protein
STRINGGLYMA03G39650.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF21923085
Representative plantOGRP9516242
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G03840.12e-97C2H2 family protein