PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

TALE

Protein Properties

Length: 308aa MW: 35332.1 Da PI: 5.665

Description

TALE family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Glyma.03G231100.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	27.1	6.9e-09	253	286	22	55
SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS Homeobox 22 nrypsaeereeLAkklgLterqVkvWFqNrRake 55 +yp++ee+ +L++ +gL+++q+ +WF N+R ++ Glyma.03G231100.1.p 253 WPYPTEEEKVKLSEITGLDQKQINNWFINQRKRH 286 58*****************************885 PP
2	ELK	30	1.2e-10	206	227	1	22
ELK 1 ELKhqLlrKYsgyLgsLkqEFs 22 +LK++LlrKYsg+ ++L++EF+ Glyma.03G231100.1.p 206 RLKEMLLRKYSGHFSGLRKEFL 227 69*******************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM01255	4.7E-21	60	104	IPR005540	KNOX1
Pfam	PF03790	5.6E-21	62	103	IPR005540	KNOX1
SMART	SM01256	6.9E-23	107	158	IPR005541	KNOX2
Pfam	PF03791	3.7E-22	111	157	IPR005541	KNOX2
PROSITE profile	PS51213	9.62	206	226	IPR005539	ELK domain
Pfam	PF03789	1.1E-8	206	227	IPR005539	ELK domain
SMART	SM01188	3.7E-5	206	227	IPR005539	ELK domain
PROSITE profile	PS50071	12.503	226	289	IPR001356	Homeobox domain
SuperFamily	SSF46689	7.7E-19	228	298	IPR009057	Homeodomain-like
SMART	SM00389	3.2E-13	228	293	IPR001356	Homeobox domain
CDD	cd00086	4.95E-13	229	289	No hit	No description
Gene3D	G3DSA:1.10.10.60	3.6E-26	231	290	IPR009057	Homeodomain-like
Pfam	PF05920	5.1E-16	246	285	IPR008422	Homeobox KN domain
PROSITE pattern	PS00027	0	264	287	IPR017970	Homeobox, conserved site

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 308 aa Download sequence Send to blast
MEAVYRLKPL LPCLEEEVVR VGNATTSEMR VGSTANCCYL QLEAPQQNNV TESSSDMSDR 60 MIKIQIANHP LYPDLLSAYI ECQKVGAPPE LACLLEEIGR ESHRMNARRE IVEGPELDHF 120 METFCEVLHR YKEELSRPFN EATLFLGDME SQLSNLCNGT LTKSSDNNNR SDEVASGASE 180 EELSCGEMEA FEDHVSSSVT CPSDQRLKEM LLRKYSGHFS GLRKEFLKRR KKGKLPKDAR 240 IALMDWWNTH HRWPYPTEEE KVKLSEITGL DQKQINNWFI NQRKRHWKPT DDMRSAVMDG 300 IRGPMLF*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Gma.36070	0.0	epicotyl\| root

Expression -- Description ? help Back to Top
Source	Description
Uniprot	DEVELOPMENTAL STAGE: Highly expressed in the early globular stage embryo before 2 days after pollination (DAP), but not in the endosperm. At 3 and 4 DAP, expression is restricted to the region around or just below the center of the ventral side of the embryo, where the shoot apex subsequently arises. During the transition to the shoot apex differentiation stage, expression is divided between the upper and basal regions of the shoot area, and the notch between the first leaf primordium and epiblast, respectively. When the first leaf primordia is evident, expression is localized to the notches between the shoot apical meristem (SAM) and the first leaf primordium and the putative second leaf primordium. Expressed uniformly in the inflorescence meristem, but after the transition from inflorescence to the floral phase, located specifically in the notches between the floral meristem and glume primordia. At later stages of flower development, uniformly expressed throughout the corpus of the meristem, and in the notches between glume primordia, but less well defined than in the previous stage. {ECO:0000269\|PubMed:10488233}.

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that may be involved in shoot formation during early embryogenesis. {ECO:0000269\|PubMed:10488233}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Glyma.03G231100.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT095974	0.0	BT095974.1 Soybean clone JCVI-FLGm-20M5 unknown mRNA.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003520792.1	0.0	homeobox protein knotted-1-like 1 isoform X1
Refseq	XP_006577210.1	0.0	homeobox protein knotted-1-like 1 isoform X1
Refseq	XP_006577211.1	0.0	homeobox protein knotted-1-like 1 isoform X1
Refseq	XP_006577212.1	0.0	homeobox protein knotted-1-like 1 isoform X1
Refseq	XP_028226477.1	0.0	homeobox protein knotted-1-like 1
Refseq	XP_028226478.1	0.0	homeobox protein knotted-1-like 1
Refseq	XP_028226479.1	0.0	homeobox protein knotted-1-like 1
Refseq	XP_028226480.1	0.0	homeobox protein knotted-1-like 1
Swissprot	Q9FP29	2e-87	KNOS1_ORYSJ; Homeobox protein knotted-1-like 1
TrEMBL	A0A445LFY4	0.0	A0A445LFY4_GLYSO; Homeobox protein knotted-1-like 1 isoform A
TrEMBL	K7KGK3	0.0	K7KGK3_SOYBN; Uncharacterized protein
STRING	GLYMA03G39041.2	0.0	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF620	34	125
Representative plant	OGRP167	17	148

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G23380.1	6e-84	KNOTTED1-like homeobox gene 6

Link Out ? help Back to Top
Phytozome	Glyma.03G231100.1.p
Entrez Gene	100814830

Publications ? help Back to Top
Park SH, et al. A Ds-insertion mutant of OSH6 (Oryza sativa Homeobox 6) exhibits outgrowth of vestigial leaf-like structures, bracts, in rice. Planta, 2007. 227(1): p. 1-12 [PMID:17624547]