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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.03G227800.1.p | ||||||||
Common Name | GLYMA_03G227800 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | bHLH | ||||||||
Protein Properties | Length: 625aa MW: 67831.9 Da PI: 6.1024 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 43.8 | 4.7e-14 | 376 | 422 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 hn ErrRRdri +++ L+el+P++ K +Ka++L +A+eY+ Lq Glyma.03G227800.1.p 376 VHNLSERRRRDRIDEKMRALQELIPNC-----NKADKASMLDEAIEYLETLQ 422 5*************************8.....6****************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 1.44E-18 | 370 | 431 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 16.768 | 372 | 421 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 2.1E-18 | 373 | 430 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 9.00E-8 | 375 | 426 | No hit | No description |
Pfam | PF00010 | 1.9E-11 | 376 | 422 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 3.1E-15 | 378 | 427 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 625 aa Download sequence Send to blast |
MPLHELYRVA KGKLDDPIEM NNNTTCAVDQ SSVPNNDLFE LIWEKGQISV QGQSSRARVS 60 PNCKTLPSHT PIGYANNAIT TNTRMGKCGN LGAELNEIRR LVPSGEVDLS EEEEDMVMPW 120 FSYGRDDDSL QHGYSTDFFH EPSGVMNELS ASNNFSLLDR RNNCSKIFRD THKHSPFASV 180 RSRVADIAEN NANNVPPGSS GFSSLKMEKQ GPVMCSNNSS TMMNFSHFAK PAAIVKANLE 240 NIGLASRSGS VGIKIKSADE STKVELSRGE RPKKPAIHNQ DQDVTVSTKG DPSCNDVSKV 300 DQNQTSNIVV GESGNKGHEA VEKGVEPAVV SSSVCSGNDT EDSESQSEDV EEESVGVKKE 360 VHARGFGATR GRSAEVHNLS ERRRRDRIDE KMRALQELIP NCNKADKASM LDEAIEYLET 420 LQLQLQIMSM GSGLYVPAMM LPPGMQHMHA PHMGPFSPIG VGMQMRLGMG MLDANVIESS 480 RFIQVPQMQG TQLPITHTPG SSVLHGMARP NAQVFGHHPS QVHPMPMPHA PIFSFPGEPF 540 INPSSTLGLM ETVDKASSAF GLKDQIPQLV QNTNNGCNST NQMSTQCEAT IGGFEHSTLV 600 LNSGHATSAN DRGASNPSKE DKHL* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 380 | 385 | ERRRRD |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.03G227800.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC235180 | 0.0 | AC235180.1 Glycine max strain Williams 82 clone GM_WBb0008A05, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_028216907.1 | 0.0 | transcription factor PIF3-like | ||||
TrEMBL | A0A0R0KNC3 | 0.0 | A0A0R0KNC3_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA03G38675.1 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF5271 | 33 | 53 | Representative plant | OGRP258 | 16 | 128 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G09530.2 | 9e-47 | phytochrome interacting factor 3 |
Link Out ? help Back to Top | |
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Phytozome | Glyma.03G227800.1.p |