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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
Glyma.03G227700.1.p |
| Common Name | GLYMA_03G227700, Glyma03g38660.2, LOC778182 |
| Organism |
|
| Taxonomic ID |
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| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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| Family |
MYB |
| Protein Properties |
Length: 419aa MW: 46703.9 Da PI: 7.8305 |
| Description |
MYB family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Glyma.03G227700.1.p | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | Myb_DNA-binding | 58.2 | 1.9e-18 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
+g W++eEde+l+++++++G g+W+++++ g+ R++k+c++rw +yl
Glyma.03G227700.1.p 14 KGLWSPEEDEKLLNYITKHGHGCWSSVPKLAGLQRCGKSCRLRWINYL 61
678*******************************************97 PP
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| 2 | Myb_DNA-binding | 42.8 | 1.2e-13 | 67 | 110 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46
rg+++++E+ +v++++ lG++ W+ Ia+ ++ gRt++++k+ w++
Glyma.03G227700.1.p 67 RGAFSQQEENSIVELHAVLGNR-WSQIAAQLP-GRTDNEIKNLWNS 110
89********************.*********.***********97 PP
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| Sequence ? help Back to Top |
| Protein Sequence Length: 419 aa
Download sequence Send
to blast |
MGRHSCCYKQ KLRKGLWSPE EDEKLLNYIT KHGHGCWSSV PKLAGLQRCG KSCRLRWINY 60
LRPDLKRGAF SQQEENSIVE LHAVLGNRWS QIAAQLPGRT DNEIKNLWNS CLKKKLRQRG 120
IDPNTHQPLS EIENDKDKPL TADKSNQKAS NEVMSLVEPP KPKPIATTAT TSMPMDRHPL 180
EVSSTSKISS GNNNSTLDRF DSSITSSDMM GMGYFPFQHL NYGPNMGLTT TPNNTPLCFI 240
PSSTSSQMMS ELNSTMFHSM FPTHVKPTVS LHSNNNNNPS SISSDGVQNW EVGTISNNNN 300
NNNASKSNGS SSCSIQLQSS STITWGLQQA ESATKAEQED IKWSEYLNNT PFYLGTTPVQ 360
HQTTNSLYSS DEVKPETTGF IADESSTMSW HHSQHNFQPS EIYTKDLQRF SVAFGQTL*
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| Expression --
Description ? help
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| Source |
Description |
| Uniprot | TISSUE SPECIFICITY: Expressed specifically in guard cells (PubMed:16005292). Expressed in sink tissues, such as xylem, roots and developing seeds (PubMed:22708996). {ECO:0000269|PubMed:16005292, ECO:0000269|PubMed:22708996}. |
| Functional Description ? help
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| Source |
Description |
| UniProt | Transcription factor that coordinates a small network of downstream target genes required for several aspects of plant growth and development, such as xylem formation and xylem cell differentiation, and lateral root formation (PubMed:22708996). Regulates a specific set of target genes by binding DNA to the AC cis-element 5'-ACCTAC-3' (PubMed:23741471). Functions as a transcriptional regulator of stomatal closure. Plays a role the regulation of stomatal pore size independently of abscisic acid (ABA) (PubMed:16005292). Required for seed coat mucilage deposition during the development of the seed coat epidermis (PubMed:19401413). Involved in the induction of trichome initiation and branching by positively regulating GL1 and GL2. Required for gibberellin (GA) biosynthesis and degradation by positively affecting the expression of the enzymes that convert GA9 into the bioactive GA4, as well as the enzymes involved in the degradation of GA4 (PubMed:28207974). {ECO:0000269|PubMed:16005292, ECO:0000269|PubMed:19401413, ECO:0000269|PubMed:22708996, ECO:0000269|PubMed:23741471, ECO:0000269|PubMed:28207974}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | KT031186 | 0.0 | KT031186.1 Glycine max clone HN_CCL_14 MYB/HD-like transcription factor (Glyma03g38660.2) mRNA, complete cds. |
