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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.03G211500.1.p | ||||||||
Common Name | GLYMA_03G211500, LOC100780237 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | HB-other | ||||||||
Protein Properties | Length: 1025aa MW: 113880 Da PI: 9.5063 | ||||||||
Description | HB-other family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 21.4 | 4.3e-07 | 69 | 125 | 1 | 57 |
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 +r+R ++++ ++ ++++F + +s++e +e+++ lg+t +qV+ +F +R + ++ Glyma.03G211500.1.p 69 KRPRDLLNPKAVNYMQSVFSIKDAISKKELREISALLGVTVTQVRDFFNAQRSRVRR 125 799**************************************************9987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50071 | 10.203 | 66 | 126 | IPR001356 | Homeobox domain |
SMART | SM00389 | 2.3E-6 | 68 | 130 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 8.55E-7 | 68 | 132 | IPR009057 | Homeodomain-like |
Pfam | PF00046 | 1.4E-4 | 69 | 125 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 4.4E-6 | 69 | 135 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 6.46E-6 | 69 | 126 | No hit | No description |
Gene3D | G3DSA:1.20.930.10 | 1.6E-4 | 225 | 310 | IPR017923 | Transcription factor IIS, N-terminal |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006351 | Biological Process | transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 1025 aa Download sequence Send to blast |
MDAWNEDFSE LEIGSSTESF QKFLVSQREL FHSQIDQFQE IVVTQCKLTG VNPLSQEMAA 60 GALSIKIGKR PRDLLNPKAV NYMQSVFSIK DAISKKELRE ISALLGVTVT QVRDFFNAQR 120 SRVRRSVQLS RERALSSNSC EEPHDDQINS DPMRPINPTP LNSAGLSNTE EASCSTQEVT 180 LSDLDDSDKQ FVDSIFSLMQ KEETFSGQEK LMEWILTIQN FSVLLWFLSR GGGMNLATWL 240 SKAAVEEQTS VLLLVLKVLC HLPLHKAVPM HISAILQSVN KLRFYRTSDI SNRARVLLSK 300 WSKLFARNHV IKKPNGVKTS SDGHKEMMLS RSIGQLMGSE SWHSNIDVPE DILALSSECS 360 NNFRKIGSPQ GVKLLPPSLD NSNKKSTLGV SSSQSRERRK VQLVEQPGQK SVSRSSQVTR 420 AGPVSQGRPM SADDIQKAKM RALFMQSKYG KSGSKESSET KIDSPYKQPQ TNPASIAACS 480 SKVPTPPKIE ENEKPLLLAS KATNKLEASY SKPKMDVKEP LWEKCKRVQI PWKTPAEVEL 540 KDTWRVGGGE NSKEVEVQRN RNRRDKEIIY KTVQEMPPNP KEPWDLEMDY DDTLTLEIPI 600 EQLPDGDADI AISPNHVATH SVQGVASTSS TSVATAEPDL ELLAVLLKNP ELVFALTSGQ 660 GGSIPSEETV KLLDMIKSGG VNLGLSENTN GSYGTSVKAP EKVEVSLPSP TPLSDPRTSG 720 WSSEASKNPF SRQSLAPDRI TQKHTAVATT NLLSQIPITV TTVRQQPTVV VPSSRHLTSI 780 SVSPYSLPQA TNVIPEKPPP LGHVQTSSDV GLTMKKNLIT ANASSVNFTG THSTLAMRGD 840 GTNYVKPVPN LSVQHEGLSN SFPQPFMPPS PTPSHSASQQ QRHQHLAQEV HYTEPPYRNP 900 GRSYPPQIEK SDHGSDNMWR VRQDHVSSSY LSQRNHNNNY NTIVGGSRQS GFYDRNNHAR 960 GEFESWSPEN SPTRNPRYAP GRNYPESRMN HGRNHRPEWS RQRGSSGHWD PGRQGNRKWH 1020 DQRR* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Gma.37940 | 0.0 | cotyledon| flower |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: Accumulates prior to flowering in the vegetative shoot apical meristem and after flowering in floral meristems. | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in shoot apex, root apex, leaf primordia and floral buds. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Seems to play a role in the regulation of flowering time in the autonomous flowering pathway by repressing FLOWERING LOCUS C expression. {ECO:0000269|PubMed:10363371}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.03G211500.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC235349 | 0.0 | AC235349.1 Glycine max strain Williams 82 clone GM_WBb0092H01, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006577137.1 | 0.0 | homeobox protein LUMINIDEPENDENS | ||||
Swissprot | Q38796 | 1e-168 | LUMI_ARATH; Homeobox protein LUMINIDEPENDENS | ||||
TrEMBL | K7KG97 | 0.0 | K7KG97_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA03G36970.2 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF9809 | 29 | 34 |
Representative plant | OGRP4121 | 13 | 15 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G02560.2 | 1e-143 | HB-other family protein |
Link Out ? help Back to Top | |
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Phytozome | Glyma.03G211500.1.p |
Entrez Gene | 100780237 |
Publications ? help Back to Top | |||
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