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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.03G208800.1.p | ||||||||
Common Name | GLYMA_03G208800 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | ARF | ||||||||
Protein Properties | Length: 591aa MW: 65327.9 Da PI: 7.3281 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 82.5 | 4.1e-26 | 49 | 150 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkl 84 f k+ltpsd++++g +++pkk+a+e+ ++++ ++++ +d++g +W++++iyr++++r++lt+GW+ Fv+a++L +gD+++F Glyma.03G208800.1.p 49 FSKILTPSDTSTHGGFSVPKKYADECfppldmTLQTPA-QEIVAKDLNGFEWRFRHIYRGQPKRHLLTSGWSLFVNAKKLVAGDSCIFV- 136 88****************************98555444.59************************************************. PP -SSSEE..EEEEE-S CS B3 85 dgrsefelvvkvfrk 99 + +++el+v+++r+ Glyma.03G208800.1.p 137 -RGESGELRVGIRRA 150 .44999*******96 PP | |||||||
2 | Auxin_resp | 74.5 | 3e-25 | 177 | 258 | 1 | 83 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 a++a+ ++++F v+Y+P++ + eF+v+++ ++k++ + + +G+R++m+ e e+s +r l+Gt++g +d+d++rWp+S Wr Lk Glyma.03G208800.1.p 177 ASNAVGNRTMFLVYYRPWTNPFEFIVHLQTYLKSTLQDYPIGTRVQMQHEVEESLRR-LAGTIIGNEDIDSIRWPGSAWRRLK 258 678999**********************************************98765.5*********************996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 1.44E-36 | 36 | 173 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 2.8E-39 | 43 | 160 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.02E-25 | 48 | 149 | No hit | No description |
SMART | SM01019 | 1.5E-27 | 49 | 151 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 4.1E-24 | 49 | 150 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 14.015 | 49 | 151 | IPR003340 | B3 DNA binding domain |
Pfam | PF06507 | 2.2E-24 | 177 | 258 | IPR010525 | Auxin response factor |
PROSITE profile | PS51745 | 16.087 | 494 | 576 | IPR000270 | PB1 domain |
SuperFamily | SSF54277 | 9.81E-5 | 498 | 570 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009734 | Biological Process | auxin-activated signaling pathway | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 591 aa Download sequence Send to blast |
MNVELKAEAY SDEVYAQVTL VPEVQKDNLC FEEEVNIDQI PSRNAAYSFS KILTPSDTST 60 HGGFSVPKKY ADECFPPLDM TLQTPAQEIV AKDLNGFEWR FRHIYRGQPK RHLLTSGWSL 120 FVNAKKLVAG DSCIFVRGES GELRVGIRRA AENLSNISQS SSLISGHSMQ LGILTNASNA 180 VGNRTMFLVY YRPWTNPFEF IVHLQTYLKS TLQDYPIGTR VQMQHEVEES LRRLAGTIIG 240 NEDIDSIRWP GSAWRRLKVQ WDAIVEDKMH PERVCPWWIE PLESAKEKKQ VPALPTKKKG 300 HALLNQRSLP GISGFGKNDV HQNSAGPSSQ TRRADGDLQG QDYSGLSPPQ PLQRAPSTDI 360 IRPSKVPIRG SRFGKENRNQ HPFLKQDPLH KSLGRSMSLT HEDLSITSSN LTSIGSESLG 420 MPSTESRDEN DAPFGQPGSS STFKLFGVNL IDSSPEIPSV NFVDLNKTSS LPSSPPMGVA 480 PGKTCKKCRC VNNRSCTKVL KLGNALGRAV DLARFNGYTE LIAELDSMFD FQGTLISGGS 540 GWHVTCLDDE GDMMQLGDYP WQDFLGVVQK MIICPKEGTD NLKPGSSANP * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldv_A | 3e-90 | 1 | 284 | 78 | 357 | Auxin response factor 1 |
4ldw_A | 3e-90 | 1 | 284 | 78 | 357 | Auxin response factor 1 |
4ldw_B | 3e-90 | 1 | 284 | 78 | 357 | Auxin response factor 1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.03G208800.1.p |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025983699.1 | 0.0 | auxin response factor 23 | ||||
TrEMBL | I1JQG4 | 0.0 | I1JQG4_SOYBN; Auxin response factor | ||||
STRING | GLYMA03G36710.1 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF13105 | 23 | 29 | Representative plant | OGRP13256 | 4 | 5 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G23980.2 | 1e-107 | auxin response factor 9 |
Link Out ? help Back to Top | |
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Phytozome | Glyma.03G208800.1.p |