![]() |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Glyma.03G203000.1.p | ||||||||
Common Name | GLYMA_03G203000, LOC100527677 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
|
||||||||
Family | NF-YA | ||||||||
Protein Properties | Length: 329aa MW: 35903.4 Da PI: 8.8308 | ||||||||
Description | NF-YA family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | CBFB_NFYA | 100.2 | 2e-31 | 159 | 215 | 1 | 58 |
CBFB_NFYA 1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 dep+YVNaKQy++I++RRq+Rak+ ++kl +k rkpy+heSRh hA+rRpRg+gGrF Glyma.03G203000.1.p 159 DEPIYVNAKQYHGIIRRRQSRAKAVLDHKL-TKRRKPYMHESRHLHAMRRPRGCGGRF 215 79****************************.**************************9 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00521 | 1.5E-35 | 157 | 218 | IPR001289 | Nuclear transcription factor Y subunit A |
PROSITE profile | PS51152 | 36.606 | 158 | 218 | IPR001289 | Nuclear transcription factor Y subunit A |
Pfam | PF02045 | 2.1E-27 | 160 | 215 | IPR001289 | Nuclear transcription factor Y subunit A |
PRINTS | PR00616 | 5.6E-23 | 161 | 183 | IPR001289 | Nuclear transcription factor Y subunit A |
PRINTS | PR00616 | 5.6E-23 | 192 | 215 | IPR001289 | Nuclear transcription factor Y subunit A |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 329 aa Download sequence Send to blast |
MQTVYLKEHE GNAHNFVGTL SSAASAPWWS AFGSQSVHQG ESCGQVKPFS LELPNCIDQL 60 AATKPLARGA DQVLGKGHIT QFTIFPDDCK MSDDAQKLQT TMSLQSSLTD PQSRFEIGFS 120 LPTICAKYPY TDQFYGLFSA YAPQISGRIM LPLNMTSDDE PIYVNAKQYH GIIRRRQSRA 180 KAVLDHKLTK RRKPYMHESR HLHAMRRPRG CGGRFLNTKN SVDGNGKIGN EVHKTVGEQL 240 QSSGSQSSEF LQSEVGTFNS SKETNGSSPN ISGSEVTSMY SRGGLDSFSL NHLGSAVHSF 300 ADMIDGGRGM IIPTKWVAAA GNCCNLKV* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4awl_A | 1e-18 | 159 | 219 | 2 | 62 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 173 | 192 | RRRQSRAKAVLDHKLTKRRK |
2 | 173 | 193 | RRRQSRAKAVLDHKLTKRRKP |
3 | 174 | 193 | RRQSRAKAVLDHKLTKRRKP |
Expression -- UniGene ? help Back to Top | ||||||
---|---|---|---|---|---|---|
UniGene ID | E-value | Expressed in | ||||
Gma.3584 | 0.0 | hypocotyl| root |
Function -- GeneRIF ? help Back to Top | ||||||
---|---|---|---|---|---|---|
|
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Glyma.03G203000.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | BT092539 | 0.0 | BT092539.1 Soybean clone JCVI-FLGm-16A23 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | NP_001340583.1 | 0.0 | nuclear transcription factor Y subunit A-3 | ||||
Refseq | XP_003521500.1 | 0.0 | nuclear transcription factor Y subunit A-3 isoform X1 | ||||
Refseq | XP_014629410.1 | 0.0 | nuclear transcription factor Y subunit A-3 isoform X1 | ||||
Refseq | XP_028226117.1 | 0.0 | nuclear transcription factor Y subunit A-10-like | ||||
Refseq | XP_028226118.1 | 0.0 | nuclear transcription factor Y subunit A-10-like | ||||
Refseq | XP_028226119.1 | 0.0 | nuclear transcription factor Y subunit A-10-like | ||||
TrEMBL | A0A0B2QM90 | 0.0 | A0A0B2QM90_GLYSO; Nuclear transcription factor Y subunit A-10 | ||||
TrEMBL | I1JQA1 | 0.0 | I1JQA1_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA03G36140.5 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3794 | 34 | 64 |
Representative plant | OGRP5136 | 11 | 22 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G06510.2 | 2e-53 | nuclear factor Y, subunit A10 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Glyma.03G203000.1.p |
Entrez Gene | 100527677 |
Publications ? help Back to Top | |||
---|---|---|---|
|