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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.03G202300.1.p | ||||||||
Common Name | GLYMA_03G202300, LOC100797418 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | TALE | ||||||||
Protein Properties | Length: 680aa MW: 73970.2 Da PI: 7.3363 | ||||||||
Description | TALE family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 29.3 | 1.5e-09 | 382 | 419 | 19 | 54 |
HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 Fe ++yp+ +++ LAk++gLt +qV++WF N R + Glyma.03G202300.1.p 382 FEHflHPYPKDSDKHMLAKQTGLTRSQVSNWFINARVR 419 554459******************************88 PP | |||||||
2 | BELL | 116.2 | 1.6e-37 | 246 | 317 | 1 | 72 |
BELL 1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 erqe+q+kkakL+ +l+eV++rY+qy++q+++v ssFe++ag+gsa+ Yt+lAl++iS++FrcLkdaia+q+ Glyma.03G202300.1.p 246 ERQEIQMKKAKLIGMLDEVEQRYRQYHQQMEIVGSSFEQAAGIGSARTYTALALQTISKQFRCLKDAIAGQV 317 79*******************************************************************997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00574 | 7.0E-62 | 173 | 315 | IPR006563 | POX domain |
Pfam | PF07526 | 6.3E-47 | 178 | 314 | IPR006563 | POX domain |
PROSITE profile | PS50071 | 12.195 | 360 | 423 | IPR001356 | Homeobox domain |
CDD | cd00086 | 2.85E-12 | 363 | 424 | No hit | No description |
SMART | SM00389 | 5.3E-9 | 363 | 427 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 5.99E-17 | 364 | 430 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 8.2E-29 | 366 | 429 | IPR009057 | Homeodomain-like |
Pfam | PF05920 | 2.8E-18 | 380 | 419 | IPR008422 | Homeobox KN domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 680 aa Download sequence Send to blast |
MATYFHHGNS EIQSGGADGL QTLVLMNPGY IHYSDAPPPQ QQTSQTAGNL VFLNPAAVAG 60 GNNNSFNPHA PPSHTQQFVG IPLPNSQDLN HHSMHAHHDV SALHGFLPRM QYNPWNALDP 120 ALAARENPRA QQGLSLGLGS FREGQAPAMS GDDLRISGGS PSSASGVTNN GASGIQSVLL 180 SSKYLKAAHE LLEEVVNVNN GIGTELGKKR GGQNKVVGES SAAGSGDGSV GGEGNGKRSS 240 ELSTAERQEI QMKKAKLIGM LDEVEQRYRQ YHQQMEIVGS SFEQAAGIGS ARTYTALALQ 300 TISKQFRCLK DAIAGQVRTA NKSLGEEDCF GGKMEGSRLK YVDHHLRQQR ALQQLGMIQH 360 NAWRPQRGLP ERSVSVLRAW LFEHFLHPYP KDSDKHMLAK QTGLTRSQVS NWFINARVRL 420 WKPMVEEMYT EEMKDHEQNR SEDKSSKSNE DSASKMSAPQ DKGPSNETEA KSFNSKHEVS 480 KSQNTAMVSV SRPSTSPLGV NVRSQSGFSF MGSSELDGIT QGSPKKPRNH EMMHSPNSVP 540 SMSMDVKPND ENNEQLSMKF GVERQGRNES SFMGNQTNFN GGFGQYPIGD IGRFDTEQFT 600 PRLSGNGVSL TLGLDSLPGT HQTFLPNQNI QLGRSLDIGE PNEFGAISTS SPHSTAAYES 660 ISMQNPKRFA AQLLPDFVT* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3k2a_A | 4e-16 | 369 | 427 | 5 | 63 | Homeobox protein Meis2 |
3k2a_B | 4e-16 | 369 | 427 | 5 | 63 | Homeobox protein Meis2 |
4xrs_A | 3e-16 | 369 | 426 | 1 | 58 | Homeobox protein Meis1 |
4xrs_B | 3e-16 | 369 | 426 | 1 | 58 | Homeobox protein Meis1 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Gma.41969 | 0.0 | cotyledon| leaf| seed coat |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.03G202300.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015037 | 0.0 | AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003521496.1 | 0.0 | BEL1-like homeodomain protein 1 | ||||
Refseq | XP_006577097.1 | 0.0 | BEL1-like homeodomain protein 1 | ||||
Refseq | XP_006577098.1 | 0.0 | BEL1-like homeodomain protein 1 | ||||
Refseq | XP_028226107.1 | 0.0 | BEL1-like homeodomain protein 1 | ||||
Refseq | XP_028226108.1 | 0.0 | BEL1-like homeodomain protein 1 | ||||
Refseq | XP_028226109.1 | 0.0 | BEL1-like homeodomain protein 1 | ||||
Swissprot | Q9SJ56 | 1e-172 | BLH1_ARATH; BEL1-like homeodomain protein 1 | ||||
TrEMBL | A0A445LEK2 | 0.0 | A0A445LEK2_GLYSO; BEL1-like homeodomain protein 1 isoform A | ||||
TrEMBL | I1JQ89 | 0.0 | I1JQ89_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA03G36070.1 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1627 | 34 | 92 |
Representative plant | OGRP133 | 16 | 172 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G35940.3 | 1e-155 | BEL1-like homeodomain 1 |
Link Out ? help Back to Top | |
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Phytozome | Glyma.03G202300.1.p |
Entrez Gene | 100797418 |
Publications ? help Back to Top | |||
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