PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.03G199000.1.p
Common NameGLYMA_03G199000, LOC100802734
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family B3
Protein Properties Length: 289aa    MW: 32721.9 Da    PI: 7.0802
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.03G199000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3100.69.1e-3268167197
                          EEEE-..-HHHHTT-EE--HHH.HTT...---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
                   B3   1 ffkvltpsdvlksgrlvlpkkfaeeh...ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 
                          f+k ltpsdv+k++rlv+pk++ae+h   +++ +++  l++edesg+ W+++++y+++s++yvltkGW+++vk+++L +gD+v+F+++++
  Glyma.03G199000.1.p  68 FEKPLTPSDVGKLNRLVIPKQHAEKHfplDSSAAKGLLLSFEDESGKCWRFRYSYWNSSQSYVLTKGWSRYVKDKRLHAGDVVLFHRHRS 157
                          99***************************88889999*************************************************8776 PP

                          SEE..EEEEE CS
                   B3  88 sefelvvkvf 97 
                            ++++++  
  Glyma.03G199000.1.p 158 LPQRFFISCS 167
                          4444566555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.4E-4062177IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019366.41E-3264171IPR015300DNA-binding pseudobarrel domain
CDDcd100178.14E-3067157No hitNo description
PROSITE profilePS5086314.02968168IPR003340B3 DNA binding domain
PfamPF023622.8E-2868166IPR003340B3 DNA binding domain
SMARTSM010191.5E-2268169IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 289 aa     Download sequence    Send to blast
MSSINHYSPE TTLYWTNDQQ QQAAMWLSNS HTPRFNLNDE EEEEEDDVIV SDKATNNLTQ  60
EEEKVAMFEK PLTPSDVGKL NRLVIPKQHA EKHFPLDSSA AKGLLLSFED ESGKCWRFRY  120
SYWNSSQSYV LTKGWSRYVK DKRLHAGDVV LFHRHRSLPQ RFFISCSRRQ PNPVPAHVST  180
TRSSASFYSA HPPYPAHHFP FPYQPHSLHA PGGGSQGQNE TTPGGNSSSS GSGRVLRLFG  240
VNMECQPDNH NDSQNSTPEC SYTHLYHHQT SSYSSSSNPH HHMVPQQP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wid_A2e-466617612124DNA-binding protein RAV1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.87160.0somatic embryo| stem
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.03G199000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150373e-98AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006577087.10.0B3 domain-containing protein At2g36080
RefseqXP_028226071.10.0B3 domain-containing protein At2g36080-like
SwissprotQ8GYJ25e-60Y2608_ARATH; B3 domain-containing protein At2g36080
SwissprotQ9FNI31e-59Y5625_ARATH; B3 domain-containing protein At5g06250
TrEMBLA0A0B2RM850.0A0A0B2RM85_GLYSO; B3 domain-containing protein
TrEMBLK7KG320.0K7KG32_SOYBN; Uncharacterized protein
STRINGGLYMA03G35700.20.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF57393452
Representative plantOGRP36516108
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G36080.19e-59B3 family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Tanaka M, et al.
    The Minimum Open Reading Frame, AUG-Stop, Induces Boron-Dependent Ribosome Stalling and mRNA Degradation.
    Plant Cell, 2016. 28(11): p. 2830-2849
    [PMID:27760805]