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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.03G197900.1.p | ||||||||
Common Name | GLYMA_03G197900, LOC100800056 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | NAC | ||||||||
Protein Properties | Length: 258aa MW: 29482 Da PI: 6.8827 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 145.1 | 3.8e-45 | 4 | 134 | 1 | 127 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk....kvkaeekewyfFskrdkkyatgkrknratksgyWkat 86 +ppG+rF Pt+eel+ +yL++k+eg++ ++++vi+ vdiy+++P++Lp+ + +++++w+fF++r++++a+g r++r t++gyWkat Glyma.03G197900.1.p 4 MPPGYRFYPTEEELILFYLHNKLEGEREDMNRVIPVVDIYDYNPSQLPQisgeASMGDTEQWFFFIPRQESEARGGRPKRLTTTGYWKAT 93 79****************************99***************96556422335669***************************** PP NAM 87 gkdkevlskkgelvglkktLvfykgrapkgektdWvmheyr 127 g+ ++v+s++++ +g+k+t+vfy+grap+g+ktdW m+ey+ Glyma.03G197900.1.p 94 GSPNHVYSSDNHIIGIKRTMVFYSGRAPNGTKTDWKMNEYS 134 ****************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 3.79E-48 | 3 | 164 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 47.756 | 4 | 164 | IPR003441 | NAC domain |
Pfam | PF02365 | 3.2E-22 | 5 | 134 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 258 aa Download sequence Send to blast |
MGNMPPGYRF YPTEEELILF YLHNKLEGER EDMNRVIPVV DIYDYNPSQL PQISGEASMG 60 DTEQWFFFIP RQESEARGGR PKRLTTTGYW KATGSPNHVY SSDNHIIGIK RTMVFYSGRA 120 PNGTKTDWKM NEYSAIKGEP SSSISNKAVP TLRKEFSLCR VYKKSKCLRA FDRRPPPRRD 180 VVSYSGAQNV EEQQKGSTLY DYHHKIMVKR STTCSPETST SSGDHDQPPL HGEETTQMDV 240 DPFLDWEKVD FFLGSEP* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 1e-35 | 3 | 164 | 16 | 165 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 1e-35 | 3 | 164 | 16 | 165 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 1e-35 | 3 | 164 | 16 | 165 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 1e-35 | 3 | 164 | 16 | 165 | NO APICAL MERISTEM PROTEIN |
3swm_A | 2e-35 | 3 | 164 | 19 | 168 | NAC domain-containing protein 19 |
3swm_B | 2e-35 | 3 | 164 | 19 | 168 | NAC domain-containing protein 19 |
3swm_C | 2e-35 | 3 | 164 | 19 | 168 | NAC domain-containing protein 19 |
3swm_D | 2e-35 | 3 | 164 | 19 | 168 | NAC domain-containing protein 19 |
3swp_A | 2e-35 | 3 | 164 | 19 | 168 | NAC domain-containing protein 19 |
3swp_B | 2e-35 | 3 | 164 | 19 | 168 | NAC domain-containing protein 19 |
3swp_C | 2e-35 | 3 | 164 | 19 | 168 | NAC domain-containing protein 19 |
3swp_D | 2e-35 | 3 | 164 | 19 | 168 | NAC domain-containing protein 19 |
4dul_A | 1e-35 | 3 | 164 | 16 | 165 | NAC domain-containing protein 19 |
4dul_B | 1e-35 | 3 | 164 | 16 | 165 | NAC domain-containing protein 19 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.03G197900.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015037 | 4e-91 | AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003520702.1 | 0.0 | NAC domain-containing protein 90 | ||||
Refseq | XP_028226056.1 | 0.0 | NAC domain-containing protein 90-like | ||||
TrEMBL | A0A445LEF0 | 0.0 | A0A445LEF0_GLYSO; NAC domain-containing protein 90 | ||||
TrEMBL | I1JQ46 | 0.0 | I1JQ46_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA03G35570.1 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF871 | 34 | 123 | Representative plant | OGRP2278 | 11 | 36 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G22380.1 | 1e-72 | NAC domain containing protein 90 |
Link Out ? help Back to Top | |
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Phytozome | Glyma.03G197900.1.p |
Entrez Gene | 100800056 |