PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.03G190700.1.p
Common NameGLYMA_03G190700, LOC100812152
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family C2H2
Protein Properties Length: 289aa    MW: 31466 Da    PI: 4.3895
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.03G190700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.30.00025262285123
                          EEETTTTEEESSHHHHHHHHHH.T CS
              zf-C2H2   1 ykCpdCgksFsrksnLkrHirt.H 23 
                          y+C+ C++sF++ + L +H +  H
  Glyma.03G190700.1.p 262 YSCKPCNRSFKTEDALSSHNKAkH 285
                          89*****************88766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.601.5E-4262286IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015711.697262288IPR007087Zinc finger, C2H2
PROSITE patternPS000280264285IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009414Biological Processresponse to water deprivation
GO:0009651Biological Processresponse to salt stress
GO:0009737Biological Processresponse to abscisic acid
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0005730Cellular Componentnucleolus
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 289 aa     Download sequence    Send to blast
MEFWGVEVKS GESLKVDPGD DKIIHLSNAC LGDVTKDKEG LPVALYVKFG NQKLVLGTLS  60
SEAFPQISYD LVFEKEFELS HNWKHGSVFF TGFKAQSQSE SDNDEDSDDF DEDIPVSAAN  120
GKPEIEVKNG IKPDANEAKQ KKIANGEDED SSESESDDDS SEDQLTANGD IESSEGDDDS  180
DDEEEGDDES DEETPKKIEA SNKRGIDSSK KTPVPVKKTK FVTPQKTDSK NVVHVATPHP  240
SKQTGKATAN NKQQTPKSGG DYSCKPCNRS FKTEDALSSH NKAKHSTK*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.83800.0leaf| root| somatic embryo| stem
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.03G190700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0951670.0BT095167.1 Soybean clone JCVI-FLGm-6J20 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001240859.10.0histone deacetylase HDT1-like
RefseqXP_028225960.10.0histone deacetylase HDT1-like
TrEMBLA0A445LE360.0A0A445LE36_GLYSO; Histone deacetylase HDT1
TrEMBLC6TC870.0C6TC87_SOYBN; Uncharacterized protein
STRINGGLYMA03G34850.30.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF10253067
Representative plantOGRP10531129
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G44750.24e-33histone deacetylase 3