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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Glyma.03G179600.1.p |
Common Name | GLYMA_03G179600 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family |
NAC |
Protein Properties |
Length: 288aa MW: 33515.1 Da PI: 8.8614 |
Description |
NAC family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Glyma.03G179600.1.p | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | NAM | 161.5 | 3.3e-50 | 11 | 138 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdk 90
lppGfrFhP+deel+v+yL++kv++++l++ ++i+e+d+yk++Pw+Lp+k+ +e+ewyfF++rd+ky++g r+nr +sgyWkat +dk
Glyma.03G179600.1.p 11 LPPGFRFHPSDEELIVHYLRNKVASSPLPA-SFITEIDLYKYNPWELPSKALFGEDEWYFFTPRDRKYPNGVRPNRPDASGYWKATVNDK 99
79****************************.89***************87778999********************999*********** PP
NAM 91 evlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
+++++ + + + +kk Lvfykgr pkg+ktdW+mheyrl
Glyma.03G179600.1.p 100 PIFTScGMKSIAVKKALVFYKGRPPKGSKTDWIMHEYRL 138
****977788***************************98 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 288 aa
Download sequence Send
to blast |
MDKDANIEIQ LPPGFRFHPS DEELIVHYLR NKVASSPLPA SFITEIDLYK YNPWELPSKA 60 LFGEDEWYFF TPRDRKYPNG VRPNRPDASG YWKATVNDKP IFTSCGMKSI AVKKALVFYK 120 GRPPKGSKTD WIMHEYRLHD SMISNSRQRG SMRLDEWVLC RVRQKTISPK SILEDSNEPI 180 YEPTSHFQQM KTYASLHDDN LNKIIIGAQF MAPVAEDLFN PLKRRNIEEN ELDLYAPLNK 240 KPREVVDLGK QRLEKDVNKG YNFNNFDQWT SIMQPQELNS LAFTKYA*
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3D Structure ? help Back to Top |
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PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
1ut4_A | 9e-66 | 2 | 170 | 8 | 170 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 9e-66 | 2 | 170 | 8 | 170 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 9e-66 | 2 | 170 | 8 | 170 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 9e-66 | 2 | 170 | 8 | 170 | NO APICAL MERISTEM PROTEIN |
3swm_A | 1e-65 | 2 | 170 | 11 | 173 | NAC domain-containing protein 19 |
3swm_B | 1e-65 | 2 | 170 | 11 | 173 | NAC domain-containing protein 19 |
3swm_C | 1e-65 | 2 | 170 | 11 | 173 | NAC domain-containing protein 19 |
3swm_D | 1e-65 | 2 | 170 | 11 | 173 | NAC domain-containing protein 19 |
3swp_A | 1e-65 | 2 | 170 | 11 | 173 | NAC domain-containing protein 19 |
3swp_B | 1e-65 | 2 | 170 | 11 | 173 | NAC domain-containing protein 19 |
3swp_C | 1e-65 | 2 | 170 | 11 | 173 | NAC domain-containing protein 19 |
3swp_D | 1e-65 | 2 | 170 | 11 | 173 | NAC domain-containing protein 19 |
4dul_A | 9e-66 | 2 | 170 | 8 | 170 | NAC domain-containing protein 19 |
4dul_B | 9e-66 | 2 | 170 | 8 | 170 | NAC domain-containing protein 19 |
Search in ModeBase |
Expression --
Description ? help
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Source |
Description |
Uniprot | DEVELOPMENTAL STAGE: Expressed at the base of the inflorescence meristem and at late stages of development in petals and stamens. Up-regulated during leaf senescence. {ECO:0000269|PubMed:16640597, ECO:0000269|PubMed:9489703}. |
Uniprot | TISSUE SPECIFICITY: Expressed in senescing leaves, petals and sepals. {ECO:0000269|PubMed:16640597}. |
Functional Description ? help
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Source |
Description |
UniProt | Transcription activator that binds to, and transactivates the promoter of the abscisic aldehyde oxidase AAO3. Promotes chlorophyll degradation in leaves by enhancing transcription of AAO3, which leads to increased levels of the senescence-inducing hormone abscisic acid (ABA) (PubMed:25516602). Involved in the control of dehydration in senescing leaves. Binds to the DNA sequence 5'-CACGTAAGT-3' of SAG113 promoter. SAG113 acts as negative regulator of ABA signaling for stomatal closure in leaves, and controls water loss during leaf senescence (PubMed:22184656). Transcription factor of the NAC family involved in senescence. May function in the transition between active cell division and cell expansion (PubMed:16640597). Required for normal seed development and morphology (PubMed:18849494). {ECO:0000269|PubMed:16640597, ECO:0000269|PubMed:18849494, ECO:0000269|PubMed:22184656, ECO:0000269|PubMed:25516602}. |
Regulation -- Description ? help
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Source |
Description |
UniProt | INDUCTION: Induced by the heterodimer APETALA3 (AP3)/PISTILLATA (PI) (PubMed:9489703). Induced by senescence (PubMed:22184656, PubMed:24659488, PubMed:25516602). Induced by abscisic acid (ABA) (PubMed:22184656, PubMed:25516602). Induced by ethylene (PubMed:25516602). {ECO:0000269|PubMed:22184656, ECO:0000269|PubMed:24659488, ECO:0000269|PubMed:25516602, ECO:0000269|PubMed:9489703}. |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | AC235460 | 5e-97 | AC235460.1 Glycine max strain Williams 82 clone GM_WBb0169H15, complete sequence. |
Publications
? help Back to Top |
- Zhang K,Gan SS
An abscisic acid-AtNAP transcription factor-SAG113 protein phosphatase 2C regulatory chain for controlling dehydration in senescing Arabidopsis leaves. Plant Physiol., 2012. 158(2): p. 961-9 [PMID:22184656] - Zhang K,Halitschke R,Yin C,Liu CJ,Gan SS
Salicylic acid 3-hydroxylase regulates Arabidopsis leaf longevity by mediating salicylic acid catabolism. Proc. Natl. Acad. Sci. U.S.A., 2013. 110(36): p. 14807-12 [PMID:23959884] - Shinozaki Y, et al.
Expression of an AtNAP gene homolog in senescing morning glory (Ipomoea nil) petals of two cultivars with a different flower life span. J. Plant Physiol., 2014. 171(8): p. 633-8 [PMID:24709156] - Xiao D, et al.
SENESCENCE-SUPPRESSED PROTEIN PHOSPHATASE Directly Interacts with the Cytoplasmic Domain of SENESCENCE-ASSOCIATED RECEPTOR-LIKE KINASE and Negatively Regulates Leaf Senescence in Arabidopsis. Plant Physiol., 2015. 169(2): p. 1275-91 [PMID:26304848] - Sakuraba Y,Han SH,Lee SH,Hörtensteiner S,Paek NC
Arabidopsis NAC016 promotes chlorophyll breakdown by directly upregulating STAYGREEN1 transcription. Plant Cell Rep., 2016. 35(1): p. 155-66 [PMID:26441053] - Seok HY, et al.
Arabidopsis AtNAP functions as a negative regulator via repression of AREB1 in salt stress response. Planta, 2017. 245(2): p. 329-341 [PMID:27770200]
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