PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.03G176600.3.p
Common NameGLYMA_03G176600, LOC100127379
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family WRKY
Protein Properties Length: 436aa    MW: 48256.7 Da    PI: 8.5956
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.03G176600.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY103.89.4e-33159215360
                          -SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
                 WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 
                          DgynWrKYGqK+vkgse+prsYY+Ct+++Cpvkkkvers  d+++ ei+Y+geHnh+k
  Glyma.03G176600.3.p 159 DGYNWRKYGQKQVKGSEYPRSYYKCTHPNCPVKKKVERSF-DGNIAEIVYKGEHNHSK 215
                          9***************************************.***************85 PP
2WRKY1017.2e-32354411259
                          --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                 WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                           Dg++WrKYGqK+vkg+++prsY+rCt   C+v+k+ver+ +dp+ +++tYeg+Hnhe
  Glyma.03G176600.3.p 354 GDGFRWRKYGQKVVKGNPYPRSYFRCTNIMCNVRKHVERAIDDPRSFVTTYEGKHNHE 411
                          5********************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.7E-29145216IPR003657WRKY domain
SuperFamilySSF1182901.7E-25156216IPR003657WRKY domain
SMARTSM007748.0E-37157215IPR003657WRKY domain
PfamPF031063.0E-25159213IPR003657WRKY domain
PROSITE profilePS5081123.617159216IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.2E-31339413IPR003657WRKY domain
SuperFamilySSF1182902.09E-27346413IPR003657WRKY domain
PROSITE profilePS5081133.545348413IPR003657WRKY domain
SMARTSM007748.6E-38353412IPR003657WRKY domain
PfamPF031068.7E-25355411IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009957Biological Processepidermal cell fate specification
GO:0010214Biological Processseed coat development
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 436 aa     Download sequence    Send to blast
MDIKEAQRVV ISKPVASRPT CSTFKSFSEL LAGAINVSPA IESSPTTVSA IRPKTVRFKP  60
AMNQPPAGFV SSQADTFGAA LDNSSDMSPK LDTKQSLIYK PTAKLVSKTT VSLLANMSIT  120
PQTETNYQSS EPSKMVQQNI EEDQKALTSS VNCDRPSYDG YNWRKYGQKQ VKGSEYPRSY  180
YKCTHPNCPV KKKVERSFDG NIAEIVYKGE HNHSKPQLHK RNSAAGTQGS GVMSDGMVQD  240
MWSNSHSERN EGNEVRIENT GLSMHSDYYV KVPQPNDSSL NIGATNAGGG SMENSCGLSG  300
EYEEGSKGFE AQEDEHRSKR RKNENQSNEA ALSEEGLVEP RIVMQSFTDS EVLGDGFRWR  360
KYGQKVVKGN PYPRSYFRCT NIMCNVRKHV ERAIDDPRSF VTTYEGKHNH EMPLKNTGTV  420
ASERDSQASL SKDKP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A8e-31159413877Probable WRKY transcription factor 4
2lex_A8e-31159413877Probable WRKY transcription factor 4
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.245770.0flower
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Leaf promordia, trichomes, atrichoblasts, fertilized eggs, seed coat.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Regulates trichome development, production of mucilage and tannin in seed coats, and maybe root hair development. {ECO:0000269|PubMed:12084832}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.03G176600.3.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Not induced by salicylic acid or wounding. {ECO:0000269|PubMed:12084832}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKT0312420.0KT031242.1 Glycine max clone HN_CCL_24 WRKY transcription factor (Glyma19g36100.1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014629344.10.0WRKY transcription factor 44 isoform X2
RefseqXP_028225768.10.0WRKY transcription factor 44-like isoform X3
SwissprotQ9ZUU01e-106WRK44_ARATH; WRKY transcription factor 44
TrEMBLA0A0R0KUJ30.0A0A0R0KUJ3_SOYBN; Uncharacterized protein
TrEMBLA0A445LDP70.0A0A445LDP7_GLYSO; WRKY transcription factor 44 isoform D
STRINGGLYMA03G33376.10.0(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37260.11e-108WRKY family protein
Publications ? help Back to Top
  1. Kim K,Jiang K,Teng SL,Feldman LJ,Huang H
    Using biologically interrelated experiments to identify pathway genes in Arabidopsis.
    Bioinformatics, 2012. 28(6): p. 815-22
    [PMID:22271267]
  2. Simon M, et al.
    Tissue-specific profiling reveals transcriptome alterations in Arabidopsis mutants lacking morphological phenotypes.
    Plant Cell, 2013. 25(9): p. 3175-85
    [PMID:24014549]
  3. Ranocha P,Francoz E,Burlat V,Dunand C
    Expression of PRX36, PMEI6 and SBT1.7 is controlled by complex transcription factor regulatory networks for proper seed coat mucilage extrusion.
    Plant Signal Behav, 2014. 9(11): p. e977734
    [PMID:25531128]
  4. Verweij W, et al.
    Functionally Similar WRKY Proteins Regulate Vacuolar Acidification in Petunia and Hair Development in Arabidopsis.
    Plant Cell, 2016. 28(3): p. 786-803
    [PMID:26977085]
  5. Gonzalez A, et al.
    TTG2 controls the developmental regulation of seed coat tannins in Arabidopsis by regulating vacuolar transport steps in the proanthocyanidin pathway.
    Dev. Biol., 2016. 419(1): p. 54-63
    [PMID:27046632]
  6. Hassani-Pak K, et al.
    Developing integrated crop knowledge networks to advance candidate gene discovery.
    Appl Transl Genom, 2016. 11: p. 18-26
    [PMID:28018846]