PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

C2H2

Protein Properties

Length: 159aa MW: 17876.7 Da PI: 9.5089

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Glyma.03G173300.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	11.7	0.00081	47	69	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ C++ Fs+ L H +H Glyma.03G173300.1.p 47 FECKTCNRKFSSFQALGGHRASH 69 89**********99999998887 PP
2	zf-C2H2	13	0.00032	95	117	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++Cg Fs L H+r+H Glyma.03G173300.1.p 95 HECSICGLEFSLGQALGGHMRKH 117 78********************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13912	7.1E-11	47	71	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.19	47	69	IPR015880	Zinc finger, C2H2-like
SuperFamily	SSF57667	3.24E-8	47	117	No hit	No description
PROSITE profile	PS50157	10.699	47	74	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	49	69	IPR007087	Zinc finger, C2H2
Pfam	PF13912	1.1E-9	95	119	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.15	95	117	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	9.12	95	117	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	97	117	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0010200	Biological Process	response to chitin
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding
GO:0044212	Molecular Function	transcription regulatory region DNA binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 159 aa Download sequence Send to blast
MNNNMLGMKR RRDDNEGSLD LAKCLMLFSC PIESNKTQQK SFGSVEFECK TCNRKFSSFQ 60 ALGGHRASHK RQKLEGEELK EQAKSLSLWN KPKMHECSIC GLEFSLGQAL GGHMRKHRAS 120 LNEGFPIIPS IDQVIAKIPV LKRSNSTRVM CLDLELHL*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Gma.55828	0.0	flower\| hypocotyl\| leaf\| meristem\| seed coat

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in leaves. {ECO:0000269\|PubMed:9132053}.

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that may be involved in stress responses. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Glyma.03G173300.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT091700	0.0	BT091700.1 Soybean clone JCVI-FLGm-8J5 unknown mRNA.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_001235663.1	1e-114	C2H2-type zinc finger protein
Refseq	XP_028225726.1	1e-114	zinc finger protein ZAT11-like
Swissprot	Q9SLD4	9e-35	ZAT11_ARATH; Zinc finger protein ZAT11
TrEMBL	A0A445LCV7	1e-112	A0A445LCV7_GLYSO; Zinc finger protein ZAT11
TrEMBL	C6T2P1	1e-112	C6T2P1_SOYBN; Uncharacterized protein
STRING	GLYMA03G33070.1	1e-113	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF316	34	175
Representative plant	OGRP131	15	149

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G37430.1	4e-37	C2H2 family protein

Link Out ? help Back to Top
Phytozome	Glyma.03G173300.1.p
Entrez Gene	100526897