PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

C2H2

Protein Properties

Length: 160aa MW: 17544 Da PI: 7.834

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Glyma.03G173200.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	11.7	0.00082	40	62	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ C++ Fs+ L H +H Glyma.03G173200.1.p 40 FECKTCNRKFSSFQALGGHRASH 62 89**********99999998887 PP
2	zf-C2H2	12.3	0.00053	78	100	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++Cg Fs L H+r+H Glyma.03G173200.1.p 78 HECSICGLGFSLGQALGGHMRKH 100 78********************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.30.160.60	7.4E-4	37	58	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
Pfam	PF13912	1.6E-11	39	64	IPR007087	Zinc finger, C2H2
SuperFamily	SSF57667	1.59E-8	39	100	No hit	No description
SMART	SM00355	0.19	40	62	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	10.325	40	67	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	42	62	IPR007087	Zinc finger, C2H2
Gene3D	G3DSA:3.30.160.60	1.9E-4	76	102	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profile	PS50157	9.64	78	101	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.25	78	100	IPR015880	Zinc finger, C2H2-like
Pfam	PF13912	2.3E-8	78	100	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	80	100	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0010200	Biological Process	response to chitin
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding
GO:0044212	Molecular Function	transcription regulatory region DNA binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 160 aa Download sequence Send to blast
MKRRIENEEA ESTVMEVCMK MFSELAGDIN VQKSPTQEAF ECKTCNRKFS SFQALGGHRA 60 SHKRPKLEDS SVGKPKIHEC SICGLGFSLG QALGGHMRKH TESINGNESF SFSSINQVVV 120 ASSSSSARTM CLDLNLTPLE NDLKFLFEIT TPPKLNISL*

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in leaves. {ECO:0000269\|PubMed:9132053}.

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that may be involved in stress responses. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Glyma.03G173200.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC235315	2e-33	AC235315.1 Glycine max strain Williams 82 clone GM_WBb0074H17, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003520631.1	1e-114	zinc finger protein ZAT11
Swissprot	Q9SLD4	8e-36	ZAT11_ARATH; Zinc finger protein ZAT11
TrEMBL	I1JPE4	1e-113	I1JPE4_SOYBN; Uncharacterized protein
STRING	GLYMA03G33060.1	1e-114	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF316	34	175
Representative plant	OGRP131	15	149

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G37430.1	5e-35	C2H2 family protein

Link Out ? help Back to Top
Phytozome	Glyma.03G173200.1.p
Entrez Gene	100800759